Pregenerated sensors for TRBC1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000076490Ensembl transcript IDs: ENSMUST00000192856.6
Found 11 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR CCA 90 bp | ATTGTAAGTGTAGGCATTTTCCAGGTCACAAGAATTTCAGACATACAAATGCACCTAGTAGGCAGAATTTaGGATGCACAGACAAATGAG | + |
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Preference number: 2 (lower is better) Translates to: IVSVGIFQVTRISDIQMHLVGRI*DAQTNE Trigger: CTCATTTGTCTGTGCATCCCAAATTCTGCCTACTAG...GTGCATTTGTATGTCTGAAATTCTTGTGACCTGGAAAATGCCTACACTTACAAT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000192856.6 |
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| 3UTR-3UTR CAA 90 bp | TGTAAGTGTAGGCATTTTCCAGGTCACAAGAATTTCAGACATACAAATGCACCTATGTGTTGTCAGCTCTaGTATTCATCTTCACATCTG | + |
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Preference number: 3 (lower is better) Translates to: CKCRHFPGHKNFRHTNAPMCCQL*YSSSHL Trigger: CAGATGTGAAGATGAATACAAGAGCTGACAACACAT...AGGTGCATTTGTATGTCTGAAATTCTTGTGACCTGGAAAATGCCTACACTTACA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000192856.6 |
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| CDS-3UTR TCA 90 bp | ATTGTAAGTGTAGGCATTTTCCAGGTCACAAGAATTTCAGACATACAAATGCACCCTGAGGGTCCGTGCTaGCCCCACTGTGGACCTCCT | + |
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Preference number: 4 (lower is better) Translates to: IVSVGIFQVTRISDIQMHPEGPC*PHCGPP Trigger: AGGAGGTCCACAGTGGGGTCAGCACGGACCCTCAGG...GTGCATTTGTATGTCTGAAATTCTTGTGACCTGGAAAATGCCTACACTTACAAT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000192856.6 |
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| CDS-3UTR TCA 90 bp | TGTAAGTGTAGGCATTTTCCAGGTCACAAGAATTTCAGACATACAAATGCACCTTGTGACAGGTTTGGGTaGGCCCTCTGGCCACTTGTC | + |
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Preference number: 4 (lower is better) Translates to: CKCRHFPGHKNFRHTNAPCDRFG*ALWPLV Trigger: GACAAGTGGCCAGAGGGCTCACCCAAACCTGTCACA...AGGTGCATTTGTATGTCTGAAATTCTTGTGACCTGGAAAATGCCTACACTTACA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000192856.6 |
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| CDS-3UTR TCA 90 bp | ATTGTAAGTGTAGGCATTTTCCAGGTCACAAGAATTTCAGACATACAAATGCACCCACTTGTCCTCCTCTaGAAGCCCATGGAACTGCAC | + |
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Preference number: 4 (lower is better) Translates to: IVSVGIFQVTRISDIQMHPLVLL*KPMELH Trigger: GTGCAGTTCCATGGGCTTTCAGAGGAGGACAAGTGG...GTGCATTTGTATGTCTGAAATTCTTGTGACCTGGAAAATGCCTACACTTACAAT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000192856.6 |
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| CDS-3UTR TCA 90 bp | TGTAAGTGTAGGCATTTTCCAGGTCACAAGAATTTCAGACATACAAATGCACCTTCACCACCAGTGTACTaGCAAGCACAGCATACAGGG | + |
|
Preference number: 4 (lower is better) Translates to: CKCRHFPGHKNFRHTNAPSPPVY*QAQHTG Trigger: CCCTGTATGCTGTGCTTGTCAGTACACTGGTGGTGA...AGGTGCATTTGTATGTCTGAAATTCTTGTGACCTGGAAAATGCCTACACTTACA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000192856.6 |
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| CDS-3UTR CCA 90 bp | TGTAAGTGTAGGCATTTTCCAGGTCACAAGAATTTCAGACATACAAATGCACCTGCACAGCATACAGGGTaGCTTTCCCTAGCAGGATCT | + |
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Preference number: 4 (lower is better) Translates to: CKCRHFPGHKNFRHTNAPAQHTG*LSLAGS Trigger: AGATCCTGCTAGGGAAAGCCACCCTGTATGCTGTGC...AGGTGCATTTGTATGTCTGAAATTCTTGTGACCTGGAAAATGCCTACACTTACA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000192856.6 |
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| CDS-3UTR TCA 90 bp | TGTAAGTGTAGGCATTTTCCAGGTCACAAGAATTTCAGACATACAAATGCACCTTTGTTGATAGGATGCTaGGGTAATCCCACAGTCTGC | + |
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Preference number: 4 (lower is better) Translates to: CKCRHFPGHKNFRHTNAPLLIGC*GNPTVC Trigger: GCAGACTGTGGGATTACCTCAGCATCCTATCAACAA...AGGTGCATTTGTATGTCTGAAATTCTTGTGACCTGGAAAATGCCTACACTTACA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000192856.6 |
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| CDS-3UTR GCA 90 bp | TTGATTGTAAGTGTAGGCATTTTCCAGGTCACAAGAATTTCAGACATACAAATGTGGTTGCGAGGATTGTaGCAGAAGGTAGCAGAGACC | + |
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Preference number: 4 (lower is better) Translates to: LIVSVGIFQVTRISDIQMWLRGL*QKVAET Trigger: GGTCTCTGCTACCTTCTGGCACAATCCTCGCAACCA...CATTTGTATGTCTGAAATTCTTGTGACCTGGAAAATGCCTACACTTACAATCAA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000192856.6 |
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| CDS-3UTR TCA 90 bp | TTGATTGTAAGTGTAGGCATTTTCCAGGTCACAAGAATTTCAGACATACAAATGTGCAATCTCTGCTTTTaGTGGCTCAAACAAGGAGAC | + |
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Preference number: 4 (lower is better) Translates to: LIVSVGIFQVTRISDIQMCNLCF*WLKQGD Trigger: GTCTCCTTGTTTGAGCCATCAAAAGCAGAGATTGCA...CATTTGTATGTCTGAAATTCTTGTGACCTGGAAAATGCCTACACTTACAATCAA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000192856.6 |
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| CDS-3UTR CAA 90 bp | ATTGTAAGTGTAGGCATTTTCCAGGTCACAAGAATTTCAGACATACAAATGCACCATGAATTCTTTCTTTaGACCATAGCCATCACCACC | + |
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Preference number: 5 (lower is better) Translates to: IVSVGIFQVTRISDIQMHHEFFL*TIAITT Trigger: GGTGGTGATGGCTATGGTCAAAAGAAAGAATTCATG...GTGCATTTGTATGTCTGAAATTCTTGTGACCTGGAAAATGCCTACACTTACAAT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000192856.6 |
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