Pregenerated sensors for TRAV9N-4 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000094231

Ensembl transcript IDs: ENSMUST00000103626.3

Found 4 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
CDS TCA 72 bp	TCACTCCTTGAACCACTGGGTCTCCTGAATAGTACTTaGGGAGCAGCTGCAGCCCCTGCCGCGGGTACTGGA	+
Preference number: 6 (lower is better) Translates to: SLLEPLGLLNST*GAAAAPAAGTG Trigger: TCCAGTACCCGCGGCAGGGGCTGCAGCTGCTCCTCAAGTACTATTCAGGAGACCCAGTGGTTCAAGGAGTGA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000103626.3
CDS TCA 72 bp	GAGACAGTGACGCGAGCATCGGGCTGTGTCACTGACTaGGCTTGGGCATCTCTCAGGACAAAGTGTATCCCC	+
Preference number: 6 (lower is better) Translates to: ETVTRASGCVTD*AWASLRTKCIP Trigger: GGGGATACACTTTGTCCTGAGAGATGCCCAAGCTCAGTCAGTGACACAGCCCGATGCTCGCGTCACTGTCTC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000103626.3
CDS CCA 72 bp	GCCGAGTCGCTCCAGTGCACAGAGGCTTTCTGCAGGTaGAAGGAAGAGTTACTCTTGCTGAACTCAGCCTCG	+
Preference number: 6 (lower is better) Translates to: AESLQCTEAFCR*KEELLLLNSAS Trigger: CGAGGCTGAGTTCAGCAAGAGTAACTCTTCCTTCCACCTGCAGAAAGCCTCTGTGCACTGGAGCGACTCGGC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000103626.3
CDS TCA 72 bp	TTCAGAGACAGTGACGCGAGCATCGGGCTGTGTCACTaGCTGAGCTTGGGCATCTCTCAGGACAAAGTGTAT	+
Preference number: 6 (lower is better) Translates to: FRDSDASIGLCH*LSLGISQDKVY Trigger: ATACACTTTGTCCTGAGAGATGCCCAAGCTCAGTCAGTGACACAGCCCGATGCTCGCGTCACTGTCTCTGAA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000103626.3

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