Pregenerated sensors for TRAV9D-4 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000090868

Ensembl transcript IDs: ENSMUST00000167409.2, ENSMUST00000200548.2

Found 3 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
CDS TCA 72 bp	GAGACAGTGACGCGAGCATCGGGCTGTGTCACTGACTaGGCTTGGGCATTCAGGACAAAGTGTATCCCCAGC	+
Preference number: 6 (lower is better) Translates to: ETVTRASGCVTD*AWAFRTKCIPS Trigger: GCTGGGGATACACTTTGTCCTGAATGCCCAAGCTCAGTCAGTGACACAGCCCGATGCTCGCGTCACTGTCTC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000167409.2
CDS CCA 72 bp	GCCGAGTCGCTCCAGTGCACAGAGGCTTTCTGCAGGTaGAAGGAAGAGTTACTCTTGCTGAACTCAGGGTCT	+
Preference number: 6 (lower is better) Translates to: AESLQCTEAFCR*KEELLLLNSGS Trigger: AGACCCTGAGTTCAGCAAGAGTAACTCTTCCTTCCACCTGCAGAAAGCCTCTGTGCACTGGAGCGACTCGGC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000167409.2 ENSMUST00000200548.2
CDS TCA 72 bp	TTCAGAGACAGTGACGCGAGCATCGGGCTGTGTCACTaGCTGAGCTTGGGCATTCAGGACAAAGTGTATCCC	+
Preference number: 6 (lower is better) Translates to: FRDSDASIGLCH*LSLGIQDKVYP Trigger: GGGATACACTTTGTCCTGAATGCCCAAGCTCAGTCAGTGACACAGCCCGATGCTCGCGTCACTGTCTCTGAA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000167409.2

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