Pregenerated sensors for TRAV9D-1 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000096478

Ensembl transcript IDs: ENSMUST00000178426.4

Found 6 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
CDS CCA 90 bp	GCTCTTGCTGAACTCAGCCTTGAAGCCGTTCACTCCTTGAACCACTaGGTTTCCCGAATAGTACTTGAGGAGAAACTGGAGGCCACGGCC	+
Preference number: 5 (lower is better) Translates to: ALAELSLEAVHSLNH*VSRIVLEEKLEATA Trigger: GGCCGTGGCCTCCAGTTTCTCCTCAAGTACTATTCGGGAAACCCAGTGGTTCAAGGAGTGAACGGCTTCAAGGCTGAGTTCAGCAAGAGC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000178426.4
CDS CCA 90 bp	AGCTCCACCGAGTCTCCTTCGAAGACAGTGACATGGGCATCAGACTaGGAAACTGTCTGTGTTTGGACATCCAGGAAGAAATGTATCCCG	+
Preference number: 5 (lower is better) Translates to: SSTESPSKTVTWASD*ETVCVWTSRKKCIP Trigger: CGGGATACATTTCTTCCTGGATGTCCAAACACAGACAGTTTCCCAGTCTGATGCCCATGTCACTGTCTTCGAAGGAGACTCGGTGGAGCT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000178426.4
CDS CCA 72 bp	GCCGAGTCGCTCCAGTGCACAGAGGCTTTCCGAAGGTaGAAGGAAGAGTCGCTCTTGCTGAACTCAGCCTTG	+
Preference number: 6 (lower is better) Translates to: AESLQCTEAFRR*KEESLLLNSAL Trigger: CAAGGCTGAGTTCAGCAAGAGCGACTCTTCCTTCCACCTTCGGAAAGCCTCTGTGCACTGGAGCGACTCGGC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000178426.4
CDS TCA 72 bp	TCACTCCTTGAACCACTGGGTTTCCCGAATAGTACTTaGGGAGAAACTGGAGGCCACGGCCATGGTGCTGGA	+
Preference number: 6 (lower is better) Translates to: SLLEPLGFPNST*GETGGHGHGAG Trigger: TCCAGCACCATGGCCGTGGCCTCCAGTTTCTCCTCAAGTACTATTCGGGAAACCCAGTGGTTCAAGGAGTGA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000178426.4
CDS CAA 90 bp	GGAAGAGTCGCTCTTGCTGAACTCAGCCTTGAAGCCGTTCACTCCTaGAACCACTGGGTTTCCCGAATAGTACTTGAGGAGAAACTGGAG	+
Preference number: 6 (lower is better) Translates to: GRVALAELSLEAVHS*NHWVSRIVLEEKLE Trigger: CTCCAGTTTCTCCTCAAGTACTATTCGGGAAACCCAGTGGTTCAAGGAGTGAACGGCTTCAAGGCTGAGTTCAGCAAGAGCGACTCTTCC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000178426.4
CDS CCA 72 bp	GAACTCAGCCTTGAAGCCGTTCACTCCTTGAACCACTaGGTTTCCCGAATAGTACTTGAGGAGAAACTGGAG	+
Preference number: 6 (lower is better) Translates to: ELSLEAVHSLNH*VSRIVLEEKLE Trigger: CTCCAGTTTCTCCTCAAGTACTATTCGGGAAACCCAGTGGTTCAAGGAGTGAACGGCTTCAAGGCTGAGTTC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000178426.4

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