Pregenerated sensors for TRAV9-1 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000096900

Ensembl transcript IDs: ENSMUST00000103581.6

Found 9 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
CDS CCA 90 bp	AAGTACACAGCCGAGTCGCTCCAGTGCACAGAGGCTTTCCGAAGGTaGAAGGAAGAGTCGCTCTTGCTGAACTCAGCCTCGAAGCCGTTC	+
Preference number: 5 (lower is better) Translates to: KYTAESLQCTEAFRR*KEESLLLNSASKPF Trigger: GAACGGCTTCGAGGCTGAGTTCAGCAAGAGCGACTCTTCCTTCCACCTTCGGAAAGCCTCTGTGCACTGGAGCGACTCGGCTGTGTACTT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000103581.6
CDS TCA 90 bp	CGAAGCCGTTCACTCCTTGAACCACTGGGTTTCCCGAATAGTACTTaGGGAGAAACTGGAGGCCATGGCCATGGTGCTGGATGTACCAGG	+
Preference number: 5 (lower is better) Translates to: RSRSLLEPLGFPNST*GETGGHGHGAGCTR Trigger: CCTGGTACATCCAGCACCATGGCCATGGCCTCCAGTTTCTCCTCAAGTACTATTCGGGAAACCCAGTGGTTCAAGGAGTGAACGGCTTCG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000103581.6
CDS CCA 90 bp	GCTCTTGCTGAACTCAGCCTCGAAGCCGTTCACTCCTTGAACCACTaGGTTTCCCGAATAGTACTTGAGGAGAAACTGGAGGCCATGGCC	+
Preference number: 5 (lower is better) Translates to: ALAELSLEAVHSLNH*VSRIVLEEKLEAMA Trigger: GGCCATGGCCTCCAGTTTCTCCTCAAGTACTATTCGGGAAACCCAGTGGTTCAAGGAGTGAACGGCTTCGAGGCTGAGTTCAGCAAGAGC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000103581.6
CDS CCA 72 bp	GCCGAGTCGCTCCAGTGCACAGAGGCTTTCCGAAGGTaGAAGGAAGAGTCGCTCTTGCTGAACTCAGCCTCG	+
Preference number: 6 (lower is better) Translates to: AESLQCTEAFRR*KEESLLLNSAS Trigger: CGAGGCTGAGTTCAGCAAGAGCGACTCTTCCTTCCACCTTCGGAAAGCCTCTGTGCACTGGAGCGACTCGGC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000103581.6
CDS TCA 72 bp	TCACTCCTTGAACCACTGGGTTTCCCGAATAGTACTTaGGGAGAAACTGGAGGCCATGGCCATGGTGCTGGA	+
Preference number: 6 (lower is better) Translates to: SLLEPLGFPNST*GETGGHGHGAG Trigger: TCCAGCACCATGGCCATGGCCTCCAGTTTCTCCTCAAGTACTATTCGGGAAACCCAGTGGTTCAAGGAGTGA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000103581.6
CDS CAA 72 bp	GCTCTTGCTGAACTCAGCCTCGAAGCCGTTCACTCCTaGAACCACTGGGTTTCCCGAATAGTACTTGAGGAG	+
Preference number: 6 (lower is better) Translates to: ALAELSLEAVHS*NHWVSRIVLEE Trigger: CTCCTCAAGTACTATTCGGGAAACCCAGTGGTTCAAGGAGTGAACGGCTTCGAGGCTGAGTTCAGCAAGAGC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000103581.6
CDS CAA 90 bp	GGAAGAGTCGCTCTTGCTGAACTCAGCCTCGAAGCCGTTCACTCCTaGAACCACTGGGTTTCCCGAATAGTACTTGAGGAGAAACTGGAG	+
Preference number: 6 (lower is better) Translates to: GRVALAELSLEAVHS*NHWVSRIVLEEKLE Trigger: CTCCAGTTTCTCCTCAAGTACTATTCGGGAAACCCAGTGGTTCAAGGAGTGAACGGCTTCGAGGCTGAGTTCAGCAAGAGCGACTCTTCC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000103581.6
CDS CCA 72 bp	GAACTCAGCCTCGAAGCCGTTCACTCCTTGAACCACTaGGTTTCCCGAATAGTACTTGAGGAGAAACTGGAG	+
Preference number: 6 (lower is better) Translates to: ELSLEAVHSLNH*VSRIVLEEKLE Trigger: CTCCAGTTTCTCCTCAAGTACTATTCGGGAAACCCAGTGGTTCAAGGAGTGAACGGCTTCGAGGCTGAGTTC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000103581.6
CDS CAA 90 bp	TTCGAAGACAGTGACATGGGCATCAGACTGGGAAACTGTCTGTGTTaGGACATCCAGGAAGAAATGTATCCCGAGGAACGAGATGAGAAC	+
Preference number: 6 (lower is better) Translates to: FEDSDMGIRLGNCLC*DIQEEMYPEERDEN Trigger: GTTCTCATCTCGTTCCTCGGGATACATTTCTTCCTGGATGTCCAAACACAGACAGTTTCCCAGTCTGATGCCCATGTCACTGTCTTCGAA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000103581.6

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