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Pregenerated sensors for TRAV8N-2 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000076821

Ensembl transcript IDs: ENSMUST00000103632.4

Found 10 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
CDS CCA 90 bp GCAGTGTCTGTAGCTAGAGTACCAGTGATGGACAGGGAGCTGCTCTaGCTGGAAGTGTCAAGGGTGGCTCTGAGTCTTCCACTGCGCTTC +
Preference number: 5 (lower is better)
Translates to: AVSVARVPVMDRELL*LEVSRVALSLPLRF
Trigger: GAAGCGCAGTGGAAGACTCAGAGCCACCCTTGACACTTCCAGCCAGAGCAGCTCCCTGTCCATCACTGGTACTCTAGCTACAGACACTGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000103632.4
CDS TCA 90 bp ACCACTGAACAACAGTTGTGTAAGTCTTGTAACTGCAGTTCATGGTaGCATCTTCACCCTCCTGGATGCTCAGAGCCTGAAGATTCTCTT +
Preference number: 5 (lower is better)
Translates to: TTEQQLCKSCNCSSW*HLHPPGCSEPEDSL
Trigger: AAGAGAATCTTCAGGCTCTGAGCATCCAGGAGGGTGAAGATGTCACCATGAACTGCAGTTACAAGACTTACACAACTGTTGTTCAGTGGT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000103632.4
CDS GCA 90 bp TCTCTCGCTCATTTGAACGTATTAAGATTAGCTGGGCAGGGCCTTTaGCTGACTTCTGTCTGTACCACTGAACAACAGTTGTGTAAGTCT +
Preference number: 5 (lower is better)
Translates to: SLAHLNVLRLAGQGL*LTSVCTTEQQLCKS
Trigger: AGACTTACACAACTGTTGTTCAGTGGTACAGACAGAAGTCAGGCAAAGGCCCTGCCCAGCTAATCTTAATACGTTCAAATGAGCGAGAGA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000103632.4
CDS TCA 72 bp GGGAGCTGCTCTGGCTGGAAGTGTCAAGGGTGGCTCTaGGTCTTCCACTGCGCTTCTCTCGCTCATTTGAAC +
Preference number: 6 (lower is better)
Translates to: GSCSGWKCQGWL*VFHCASLAHLN
Trigger: GTTCAAATGAGCGAGAGAAGCGCAGTGGAAGACTCAGAGCCACCCTTGACACTTCCAGCCAGAGCAGCTCCC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000103632.4
CDS CCA 72 bp GTAGCTAGAGTACCAGTGATGGACAGGGAGCTGCTCTaGCTGGAAGTGTCAAGGGTGGCTCTGAGTCTTCCA +
Preference number: 6 (lower is better)
Translates to: VARVPVMDRELL*LEVSRVALSLP
Trigger: TGGAAGACTCAGAGCCACCCTTGACACTTCCAGCCAGAGCAGCTCCCTGTCCATCACTGGTACTCTAGCTAC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000103632.4
CDS CAA 90 bp CCTGGATGCTCAGAGCCTGAAGATTCTCTTCTCCCCATTGGCTCTTaGCCCAGGCCACTTGAAACCATAGAGTCACCAAAGATATTCCCA +
Preference number: 6 (lower is better)
Translates to: PGCSEPEDSLLPIGS*PRPLETIESPKIFP
Trigger: TGGGAATATCTTTGGTGACTCTATGGTTTCAAGTGGCCTGGGCAAAGAGCCAATGGGGAGAAGAGAATCTTCAGGCTCTGAGCATCCAGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000103632.4
CDS CCA 72 bp CGCTTCTCTCGCTCATTTGAACGTATTAAGATTAGCTaGGCAGGGCCTTTGCCTGACTTCTGTCTGTACCAC +
Preference number: 6 (lower is better)
Translates to: RFSRSFERIKIS*AGPLPDFCLYH
Trigger: GTGGTACAGACAGAAGTCAGGCAAAGGCCCTGCCCAGCTAATCTTAATACGTTCAAATGAGCGAGAGAAGCG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000103632.4
CDS CAA 72 bp TCAGAGCCTGAAGATTCTCTTCTCCCCATTGGCTCTTaGCCCAGGCCACTTGAAACCATAGAGTCACCAAAG +
Preference number: 6 (lower is better)
Translates to: SEPEDSLLPIGS*PRPLETIESPK
Trigger: CTTTGGTGACTCTATGGTTTCAAGTGGCCTGGGCAAAGAGCCAATGGGGAGAAGAGAATCTTCAGGCTCTGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000103632.4
CDS TCA 72 bp TTCTCTTCTCCCCATTGGCTCTTTGCCCAGGCCACTTaGAACCATAGAGTCACCAAAGATATTCCCAGGAAT +
Preference number: 6 (lower is better)
Translates to: FSSPHWLFAQAT*NHRVTKDIPRN
Trigger: ATTCCTGGGAATATCTTTGGTGACTCTATGGTTTCAAGTGGCCTGGGCAAAGAGCCAATGGGGAGAAGAGAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000103632.4
CDS GCA 72 bp CATTTGAACGTATTAAGATTAGCTGGGCAGGGCCTTTaGCTGACTTCTGTCTGTACCACTGAACAACAGTTG +
Preference number: 6 (lower is better)
Translates to: HLNVLRLAGQGL*LTSVCTTEQQL
Trigger: CAACTGTTGTTCAGTGGTACAGACAGAAGTCAGGCAAAGGCCCTGCCCAGCTAATCTTAATACGTTCAAATG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000103632.4