Pregenerated sensors for TRAV8N-2 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000076821Ensembl transcript IDs: ENSMUST00000103632.4
Found 10 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
Type | Sensor | Details |
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CDS CCA 90 bp | GCAGTGTCTGTAGCTAGAGTACCAGTGATGGACAGGGAGCTGCTCTaGCTGGAAGTGTCAAGGGTGGCTCTGAGTCTTCCACTGCGCTTC | + |
Preference number: 5 (lower is better) Translates to: AVSVARVPVMDRELL*LEVSRVALSLPLRF Trigger: GAAGCGCAGTGGAAGACTCAGAGCCACCCTTGACACTTCCAGCCAGAGCAGCTCCCTGTCCATCACTGGTACTCTAGCTACAGACACTGC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000103632.4 |
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CDS TCA 90 bp | ACCACTGAACAACAGTTGTGTAAGTCTTGTAACTGCAGTTCATGGTaGCATCTTCACCCTCCTGGATGCTCAGAGCCTGAAGATTCTCTT | + |
Preference number: 5 (lower is better) Translates to: TTEQQLCKSCNCSSW*HLHPPGCSEPEDSL Trigger: AAGAGAATCTTCAGGCTCTGAGCATCCAGGAGGGTGAAGATGTCACCATGAACTGCAGTTACAAGACTTACACAACTGTTGTTCAGTGGT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000103632.4 |
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CDS GCA 90 bp | TCTCTCGCTCATTTGAACGTATTAAGATTAGCTGGGCAGGGCCTTTaGCTGACTTCTGTCTGTACCACTGAACAACAGTTGTGTAAGTCT | + |
Preference number: 5 (lower is better) Translates to: SLAHLNVLRLAGQGL*LTSVCTTEQQLCKS Trigger: AGACTTACACAACTGTTGTTCAGTGGTACAGACAGAAGTCAGGCAAAGGCCCTGCCCAGCTAATCTTAATACGTTCAAATGAGCGAGAGA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000103632.4 |
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CDS TCA 72 bp | GGGAGCTGCTCTGGCTGGAAGTGTCAAGGGTGGCTCTaGGTCTTCCACTGCGCTTCTCTCGCTCATTTGAAC | + |
Preference number: 6 (lower is better) Translates to: GSCSGWKCQGWL*VFHCASLAHLN Trigger: GTTCAAATGAGCGAGAGAAGCGCAGTGGAAGACTCAGAGCCACCCTTGACACTTCCAGCCAGAGCAGCTCCC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000103632.4 |
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CDS CCA 72 bp | GTAGCTAGAGTACCAGTGATGGACAGGGAGCTGCTCTaGCTGGAAGTGTCAAGGGTGGCTCTGAGTCTTCCA | + |
Preference number: 6 (lower is better) Translates to: VARVPVMDRELL*LEVSRVALSLP Trigger: TGGAAGACTCAGAGCCACCCTTGACACTTCCAGCCAGAGCAGCTCCCTGTCCATCACTGGTACTCTAGCTAC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000103632.4 |
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CDS CAA 90 bp | CCTGGATGCTCAGAGCCTGAAGATTCTCTTCTCCCCATTGGCTCTTaGCCCAGGCCACTTGAAACCATAGAGTCACCAAAGATATTCCCA | + |
Preference number: 6 (lower is better) Translates to: PGCSEPEDSLLPIGS*PRPLETIESPKIFP Trigger: TGGGAATATCTTTGGTGACTCTATGGTTTCAAGTGGCCTGGGCAAAGAGCCAATGGGGAGAAGAGAATCTTCAGGCTCTGAGCATCCAGG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000103632.4 |
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CDS CCA 72 bp | CGCTTCTCTCGCTCATTTGAACGTATTAAGATTAGCTaGGCAGGGCCTTTGCCTGACTTCTGTCTGTACCAC | + |
Preference number: 6 (lower is better) Translates to: RFSRSFERIKIS*AGPLPDFCLYH Trigger: GTGGTACAGACAGAAGTCAGGCAAAGGCCCTGCCCAGCTAATCTTAATACGTTCAAATGAGCGAGAGAAGCG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000103632.4 |
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CDS CAA 72 bp | TCAGAGCCTGAAGATTCTCTTCTCCCCATTGGCTCTTaGCCCAGGCCACTTGAAACCATAGAGTCACCAAAG | + |
Preference number: 6 (lower is better) Translates to: SEPEDSLLPIGS*PRPLETIESPK Trigger: CTTTGGTGACTCTATGGTTTCAAGTGGCCTGGGCAAAGAGCCAATGGGGAGAAGAGAATCTTCAGGCTCTGA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000103632.4 |
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CDS TCA 72 bp | TTCTCTTCTCCCCATTGGCTCTTTGCCCAGGCCACTTaGAACCATAGAGTCACCAAAGATATTCCCAGGAAT | + |
Preference number: 6 (lower is better) Translates to: FSSPHWLFAQAT*NHRVTKDIPRN Trigger: ATTCCTGGGAATATCTTTGGTGACTCTATGGTTTCAAGTGGCCTGGGCAAAGAGCCAATGGGGAGAAGAGAA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000103632.4 |
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CDS GCA 72 bp | CATTTGAACGTATTAAGATTAGCTGGGCAGGGCCTTTaGCTGACTTCTGTCTGTACCACTGAACAACAGTTG | + |
Preference number: 6 (lower is better) Translates to: HLNVLRLAGQGL*LTSVCTTEQQL Trigger: CAACTGTTGTTCAGTGGTACAGACAGAAGTCAGGCAAAGGCCCTGCCCAGCTAATCTTAATACGTTCAAATG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000103632.4 |