Pregenerated sensors for TRAV8D-2 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000076795Ensembl transcript IDs: ENSMUST00000103605.3, ENSMUST00000198439.5
Found 11 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS GCA 90 bp | AGCTACTTTGGCTGGAGGTGTCAAGGGTGGCTCTTAGTCTTCCACTaGGCTTCTCTCGCTCATTTGAACGTATTAAGATTATCAGGGCAG | + |
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Preference number: 5 (lower is better) Translates to: SYFGWRCQGWLLVFH*ASLAHLNVLRLSGQ Trigger: CTGCCCTGATAATCTTAATACGTTCAAATGAGCGAGAGAAGCGCAGTGGAAGACTAAGAGCCACCCTTGACACCTCCAGCCAAAGTAGCT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000103605.3 ENSMUST00000198439.5 |
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| CDS GCA 90 bp | TCTCTCGCTCATTTGAACGTATTAAGATTATCAGGGCAGGGCCTCTaGCTGAGTCTTGCCTGTACCAGTGTACAACAGTTGTATAAGTCT | + |
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Preference number: 5 (lower is better) Translates to: SLAHLNVLRLSGQGL*LSLACTSVQQLYKS Trigger: AGACTTATACAACTGTTGTACACTGGTACAGGCAAGACTCAGGCAGAGGCCCTGCCCTGATAATCTTAATACGTTCAAATGAGCGAGAGA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000103605.3 ENSMUST00000198439.5 |
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| CDS TCA 90 bp | ACCAGTGTACAACAGTTGTATAAGTCTTGTAACTGCAGTTCATGGTaGCATCTTCACCCTCCTGGATGCTCAGAGCCTGAAGATTCTCTT | + |
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Preference number: 5 (lower is better) Translates to: TSVQQLYKSCNCSSW*HLHPPGCSEPEDSL Trigger: AAGAGAATCTTCAGGCTCTGAGCATCCAGGAGGGTGAAGATGTCACCATGAACTGCAGTTACAAGACTTATACAACTGTTGTACACTGGT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000103605.3 ENSMUST00000198439.5 |
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| CDS CAA 90 bp | CCTGGATGCTCAGAGCCTGAAGATTCTCTTCTCCCCATTGGCTCTTaGCCCAGGCCACTCGAAACCATAGAGTCACCAAAGATATTCCCA | + |
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Preference number: 6 (lower is better) Translates to: PGCSEPEDSLLPIGS*PRPLETIESPKIFP Trigger: TGGGAATATCTTTGGTGACTCTATGGTTTCGAGTGGCCTGGGCAAAGAGCCAATGGGGAGAAGAGAATCTTCAGGCTCTGAGCATCCAGG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000198439.5 |
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| CDS CAA 72 bp | TCAGAGCCTGAAGATTCTCTTCTCCCCATTGGCTCTTaGCCCAGGCCACTCGAAACCATAGAGTCACCAAAG | + |
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Preference number: 6 (lower is better) Translates to: SEPEDSLLPIGS*PRPLETIESPK Trigger: CTTTGGTGACTCTATGGTTTCGAGTGGCCTGGGCAAAGAGCCAATGGGGAGAAGAGAATCTTCAGGCTCTGA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000198439.5 |
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| CDS CAA 90 bp | CCTGGATGCTCAGAGCCTGAAGATTCTCTTCTCCCCATTGGCTCTTaGAGGCCACTCGAAACCATAGAGTCACCAAAGATATTCCCAGGA | + |
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Preference number: 6 (lower is better) Translates to: PGCSEPEDSLLPIGS*RPLETIESPKIFPG Trigger: TCCTGGGAATATCTTTGGTGACTCTATGGTTTCGAGTGGCCTCAAAGAGCCAATGGGGAGAAGAGAATCTTCAGGCTCTGAGCATCCAGG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000103605.3 |
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| CDS CAA 90 bp | TGTCAAGGGTGGCTCTTAGTCTTCCACTGCGCTTCTCTCGCTCATTaGAACGTATTAAGATTATCAGGGCAGGGCCTCTGCCTGAGTCTT | + |
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Preference number: 6 (lower is better) Translates to: CQGWLLVFHCASLAH*NVLRLSGQGLCLSL Trigger: AAGACTCAGGCAGAGGCCCTGCCCTGATAATCTTAATACGTTCAAATGAGCGAGAGAAGCGCAGTGGAAGACTAAGAGCCACCCTTGACA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000103605.3 ENSMUST00000198439.5 |
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| CDS TCA 72 bp | AGAAGTACACAGCAGTGTCTTCACACTGAGCAGCAGTaGTGGACAGAGAGCTACTTTGGCTGGAGGTGTCAA | + |
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Preference number: 6 (lower is better) Translates to: RSTQQCLHTEQQ*WTESYFGWRCQ Trigger: TTGACACCTCCAGCCAAAGTAGCTCTCTGTCCATCACTGCTGCTCAGTGTGAAGACACTGCTGTGTACTTCT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000103605.3 ENSMUST00000198439.5 |
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| CDS CAA 72 bp | TGGCTCTTAGTCTTCCACTGCGCTTCTCTCGCTCATTaGAACGTATTAAGATTATCAGGGCAGGGCCTCTGC | + |
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Preference number: 6 (lower is better) Translates to: WLLVFHCASLAH*NVLRLSGQGLC Trigger: GCAGAGGCCCTGCCCTGATAATCTTAATACGTTCAAATGAGCGAGAGAAGCGCAGTGGAAGACTAAGAGCCA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000103605.3 ENSMUST00000198439.5 |
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| CDS GCA 72 bp | GGCTGGAGGTGTCAAGGGTGGCTCTTAGTCTTCCACTaGGCTTCTCTCGCTCATTTGAACGTATTAAGATTA | + |
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Preference number: 6 (lower is better) Translates to: GWRCQGWLLVFH*ASLAHLNVLRL Trigger: TAATCTTAATACGTTCAAATGAGCGAGAGAAGCGCAGTGGAAGACTAAGAGCCACCCTTGACACCTCCAGCC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000103605.3 ENSMUST00000198439.5 |
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| CDS GCA 72 bp | CATTTGAACGTATTAAGATTATCAGGGCAGGGCCTCTaGCTGAGTCTTGCCTGTACCAGTGTACAACAGTTG | + |
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Preference number: 6 (lower is better) Translates to: HLNVLRLSGQGL*LSLACTSVQQL Trigger: CAACTGTTGTACACTGGTACAGGCAAGACTCAGGCAGAGGCCCTGCCCTGATAATCTTAATACGTTCAAATG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000103605.3 ENSMUST00000198439.5 |
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