Pregenerated sensors for TRAV8D-1 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000076770

Ensembl transcript IDs: ENSMUST00000103580.4

Found 3 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
CDS TCA 72 bp	TGGACGCTCAGGGCCCACAGATTCTCTTCTGCTAGTTaGCTATTCACCCTTGTCAGTTGCAGCCACAGTGAC	+
Preference number: 6 (lower is better) Translates to: WTLRAHRFSSAS*LFTLVSCSHSD Trigger: GTCACTGTGGCTGCAACTGACAAGGGTGAATAGTCAACTAGCAGAAGAGAATCTGTGGGCCCTGAGCGTCCA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000103580.4
CDS CCA 72 bp	CGCTTCTCTCTCTCATTTGAACGTATTAAGATTAGCTaGGCAGGGCCTTCGCCTGACTTCTGTCTGTACCAC	+
Preference number: 6 (lower is better) Translates to: RFSLSFERIKIS*AGPSPDFCLYH Trigger: GTGGTACAGACAGAAGTCAGGCGAAGGCCCTGCCCAGCTAATCTTAATACGTTCAAATGAGAGAGAGAAGCG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000103580.4
CDS CAA 72 bp	CCCACAGATTCTCTTCTGCTAGTTGACTATTCACCCTaGTCAGTTGCAGCCACAGTGACACCATCAACAACC	+
Preference number: 6 (lower is better) Translates to: PTDSLLLVDYSP*SVAATVTPSTT Trigger: GGTTGTTGATGGTGTCACTGTGGCTGCAACTGACAAGGGTGAATAGTCAACTAGCAGAAGAGAATCTGTGGG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000103580.4

---

If you would like us to post a table for your organism of interest, or have questions, please reach out to eerik at stanford dot edu or xjgao at stanford.edu