Pregenerated sensors for TRAV8-1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000076831Ensembl transcript IDs: ENSMUST00000103643.4
Found 10 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
Type | Sensor | Details |
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CDS CCA 90 bp | CTTCCATTGCGCTTCTCTCTCTCATTTGAACGTATTAAGATTAGCTaGGCAGGGCCTTTGCCTGACTTCTGTCTGTACCACTGTAGGGCA | + |
Preference number: 5 (lower is better) Translates to: LPLRFSLSFERIKIS*AGPLPDFCLYHCRA Trigger: TGCCCTACAGTGGTACAGACAGAAGTCAGGCAAAGGCCCTGCCCAGCTAATCTTAATACGTTCAAATGAGAGAGAGAAGCGCAATGGAAG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000103643.4 |
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CDS GCA 90 bp | TCTCTCTCTCATTTGAACGTATTAAGATTAGCTGGGCAGGGCCTTTaGCTGACTTCTGTCTGTACCACTGTAGGGCAGTTATGGATGTCT | + |
Preference number: 5 (lower is better) Translates to: SLSHLNVLRLAGQGL*LTSVCTTVGQLWMS Trigger: AGACATCCATAACTGCCCTACAGTGGTACAGACAGAAGTCAGGCAAAGGCCCTGCCCAGCTAATCTTAATACGTTCAAATGAGAGAGAGA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000103643.4 |
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CDS TCA 72 bp | AGGAGCTGCTCTGGCTGGAGGTGTCAAGGGTGGCTCTaGGTCTTCCATTGCGCTTCTCTCTCTCATTTGAAC | + |
Preference number: 6 (lower is better) Translates to: RSCSGWRCQGWL*VFHCASLSHLN Trigger: GTTCAAATGAGAGAGAGAAGCGCAATGGAAGACTCAGAGCCACCCTTGACACCTCCAGCCAGAGCAGCTCCT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000103643.4 |
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CDS CAA 90 bp | GAGCTGCTCTGGCTGGAGGTGTCAAGGGTGGCTCTGAGTCTTCCATaGCGCTTCTCTCTCTCATTTGAACGTATTAAGATTAGCTGGGCA | + |
Preference number: 6 (lower is better) Translates to: ELLWLEVSRVALSLP*RFSLSFERIKISWA Trigger: TGCCCAGCTAATCTTAATACGTTCAAATGAGAGAGAGAAGCGCAATGGAAGACTCAGAGCCACCCTTGACACCTCCAGCCAGAGCAGCTC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000103643.4 |
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CDS TCA 72 bp | TGGACGCTCAGGGCCCACGAATTCTCTTCTGCTAGTTaGCTATTCACCCTTGTCAGTTGCAGCCACAACAAC | + |
Preference number: 6 (lower is better) Translates to: WTLRAHEFSSAS*LFTLVSCSHNN Trigger: GTTGTTGTGGCTGCAACTGACAAGGGTGAATAGTCAACTAGCAGAAGAGAATTCGTGGGCCCTGAGCGTCCA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000103643.4 |
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CDS CCA 72 bp | CGCTTCTCTCTCTCATTTGAACGTATTAAGATTAGCTaGGCAGGGCCTTTGCCTGACTTCTGTCTGTACCAC | + |
Preference number: 6 (lower is better) Translates to: RFSLSFERIKIS*AGPLPDFCLYH Trigger: GTGGTACAGACAGAAGTCAGGCAAAGGCCCTGCCCAGCTAATCTTAATACGTTCAAATGAGAGAGAGAAGCG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000103643.4 |
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CDS CAA 90 bp | TTCTCTCTCTCATTTGAACGTATTAAGATTAGCTGGGCAGGGCCTTaGCCTGACTTCTGTCTGTACCACTGTAGGGCAGTTATGGATGTC | + |
Preference number: 6 (lower is better) Translates to: FSLSFERIKISWAGP*PDFCLYHCRAVMDV Trigger: GACATCCATAACTGCCCTACAGTGGTACAGACAGAAGTCAGGCAAAGGCCCTGCCCAGCTAATCTTAATACGTTCAAATGAGAGAGAGAA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000103643.4 |
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CDS GCA 72 bp | CATTTGAACGTATTAAGATTAGCTGGGCAGGGCCTTTaGCTGACTTCTGTCTGTACCACTGTAGGGCAGTTA | + |
Preference number: 6 (lower is better) Translates to: HLNVLRLAGQGL*LTSVCTTVGQL Trigger: TAACTGCCCTACAGTGGTACAGACAGAAGTCAGGCAAAGGCCCTGCCCAGCTAATCTTAATACGTTCAAATG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000103643.4 |
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CDS CAA 72 bp | TCATTTGAACGTATTAAGATTAGCTGGGCAGGGCCTTaGCCTGACTTCTGTCTGTACCACTGTAGGGCAGTT | + |
Preference number: 6 (lower is better) Translates to: SFERIKISWAGP*PDFCLYHCRAV Trigger: AACTGCCCTACAGTGGTACAGACAGAAGTCAGGCAAAGGCCCTGCCCAGCTAATCTTAATACGTTCAAATGA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000103643.4 |
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CDS CAA 72 bp | TGGCTGGAGGTGTCAAGGGTGGCTCTGAGTCTTCCATaGCGCTTCTCTCTCTCATTTGAACGTATTAAGATT | + |
Preference number: 6 (lower is better) Translates to: WLEVSRVALSLP*RFSLSFERIKI Trigger: AATCTTAATACGTTCAAATGAGAGAGAGAAGCGCAATGGAAGACTCAGAGCCACCCTTGACACCTCCAGCCA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000103643.4 |