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Pregenerated sensors for TRAV8-1 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000076831

Ensembl transcript IDs: ENSMUST00000103643.4

Found 10 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
CDS CCA 90 bp CTTCCATTGCGCTTCTCTCTCTCATTTGAACGTATTAAGATTAGCTaGGCAGGGCCTTTGCCTGACTTCTGTCTGTACCACTGTAGGGCA +
Preference number: 5 (lower is better)
Translates to: LPLRFSLSFERIKIS*AGPLPDFCLYHCRA
Trigger: TGCCCTACAGTGGTACAGACAGAAGTCAGGCAAAGGCCCTGCCCAGCTAATCTTAATACGTTCAAATGAGAGAGAGAAGCGCAATGGAAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000103643.4
CDS GCA 90 bp TCTCTCTCTCATTTGAACGTATTAAGATTAGCTGGGCAGGGCCTTTaGCTGACTTCTGTCTGTACCACTGTAGGGCAGTTATGGATGTCT +
Preference number: 5 (lower is better)
Translates to: SLSHLNVLRLAGQGL*LTSVCTTVGQLWMS
Trigger: AGACATCCATAACTGCCCTACAGTGGTACAGACAGAAGTCAGGCAAAGGCCCTGCCCAGCTAATCTTAATACGTTCAAATGAGAGAGAGA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000103643.4
CDS TCA 72 bp AGGAGCTGCTCTGGCTGGAGGTGTCAAGGGTGGCTCTaGGTCTTCCATTGCGCTTCTCTCTCTCATTTGAAC +
Preference number: 6 (lower is better)
Translates to: RSCSGWRCQGWL*VFHCASLSHLN
Trigger: GTTCAAATGAGAGAGAGAAGCGCAATGGAAGACTCAGAGCCACCCTTGACACCTCCAGCCAGAGCAGCTCCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000103643.4
CDS CAA 90 bp GAGCTGCTCTGGCTGGAGGTGTCAAGGGTGGCTCTGAGTCTTCCATaGCGCTTCTCTCTCTCATTTGAACGTATTAAGATTAGCTGGGCA +
Preference number: 6 (lower is better)
Translates to: ELLWLEVSRVALSLP*RFSLSFERIKISWA
Trigger: TGCCCAGCTAATCTTAATACGTTCAAATGAGAGAGAGAAGCGCAATGGAAGACTCAGAGCCACCCTTGACACCTCCAGCCAGAGCAGCTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000103643.4
CDS TCA 72 bp TGGACGCTCAGGGCCCACGAATTCTCTTCTGCTAGTTaGCTATTCACCCTTGTCAGTTGCAGCCACAACAAC +
Preference number: 6 (lower is better)
Translates to: WTLRAHEFSSAS*LFTLVSCSHNN
Trigger: GTTGTTGTGGCTGCAACTGACAAGGGTGAATAGTCAACTAGCAGAAGAGAATTCGTGGGCCCTGAGCGTCCA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000103643.4
CDS CCA 72 bp CGCTTCTCTCTCTCATTTGAACGTATTAAGATTAGCTaGGCAGGGCCTTTGCCTGACTTCTGTCTGTACCAC +
Preference number: 6 (lower is better)
Translates to: RFSLSFERIKIS*AGPLPDFCLYH
Trigger: GTGGTACAGACAGAAGTCAGGCAAAGGCCCTGCCCAGCTAATCTTAATACGTTCAAATGAGAGAGAGAAGCG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000103643.4
CDS CAA 90 bp TTCTCTCTCTCATTTGAACGTATTAAGATTAGCTGGGCAGGGCCTTaGCCTGACTTCTGTCTGTACCACTGTAGGGCAGTTATGGATGTC +
Preference number: 6 (lower is better)
Translates to: FSLSFERIKISWAGP*PDFCLYHCRAVMDV
Trigger: GACATCCATAACTGCCCTACAGTGGTACAGACAGAAGTCAGGCAAAGGCCCTGCCCAGCTAATCTTAATACGTTCAAATGAGAGAGAGAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000103643.4
CDS GCA 72 bp CATTTGAACGTATTAAGATTAGCTGGGCAGGGCCTTTaGCTGACTTCTGTCTGTACCACTGTAGGGCAGTTA +
Preference number: 6 (lower is better)
Translates to: HLNVLRLAGQGL*LTSVCTTVGQL
Trigger: TAACTGCCCTACAGTGGTACAGACAGAAGTCAGGCAAAGGCCCTGCCCAGCTAATCTTAATACGTTCAAATG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000103643.4
CDS CAA 72 bp TCATTTGAACGTATTAAGATTAGCTGGGCAGGGCCTTaGCCTGACTTCTGTCTGTACCACTGTAGGGCAGTT +
Preference number: 6 (lower is better)
Translates to: SFERIKISWAGP*PDFCLYHCRAV
Trigger: AACTGCCCTACAGTGGTACAGACAGAAGTCAGGCAAAGGCCCTGCCCAGCTAATCTTAATACGTTCAAATGA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000103643.4
CDS CAA 72 bp TGGCTGGAGGTGTCAAGGGTGGCTCTGAGTCTTCCATaGCGCTTCTCTCTCTCATTTGAACGTATTAAGATT +
Preference number: 6 (lower is better)
Translates to: WLEVSRVALSLP*RFSLSFERIKI
Trigger: AATCTTAATACGTTCAAATGAGAGAGAGAAGCGCAATGGAAGACTCAGAGCCACCCTTGACACCTCCAGCCA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000103643.4