Pregenerated sensors for TRAV7-5 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000106620

Ensembl transcript IDs: ENSMUST00000200609.2

Found 6 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
CDS GCA 90 bp	GCTCCCTCTGAGACAGTGAGGGATTCTGGGCTCTGCTGCACCTTCTaGTGGCTGCTCACCCAATTAAACTGGAGCCACAGGACCACTAGT	+
Preference number: 5 (lower is better) Translates to: APSETVRDSGLCCTF*WLLTQLNWSHRTTS Trigger: ACTAGTGGTCCTGTGGCTCCAGTTTAATTGGGTGAGCAGCCAGCAGAAGGTGCAGCAGAGCCCAGAATCCCTCACTGTCTCAGAGGGAGC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000200609.2
CDS TCA 90 bp	GGTTCTCTGATGTGTAGGGAAACATGCAAGTTGGCTCTATTGAGGTaGGCTGTAAATCTGCCTTCTTCCTTTTCACCATCAGAGAAGATG	+
Preference number: 5 (lower is better) Translates to: GSLMCRETCKLALLR*AVNLPSSFSPSEKM Trigger: CATCTTCTCTGATGGTGAAAAGGAAGAAGGCAGATTTACAGCTCACCTCAATAGAGCCAACTTGCATGTTTCCCTACACATCAGAGAACC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000200609.2
CDS CCA 72 bp	ACAGTGAGGGATTCTGGGCTCTGCTGCACCTTCTGCTaGCTGCTCACCCAATTAAACTGGAGCCACAGGACC	+
Preference number: 6 (lower is better) Translates to: TVRDSGLCCTFC*LLTQLNWSHRT Trigger: GGTCCTGTGGCTCCAGTTTAATTGGGTGAGCAGCCAGCAGAAGGTGCAGCAGAGCCCAGAATCCCTCACTGT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000200609.2
CDS GCA 72 bp	ATGGCTCCCTCTGAGACAGTGAGGGATTCTGGGCTCTaGTGCACCTTCTGCTGGCTGCTCACCCAATTAAAC	+
Preference number: 6 (lower is better) Translates to: MAPSETVRDSGL*CTFCWLLTQLN Trigger: GTTTAATTGGGTGAGCAGCCAGCAGAAGGTGCAGCAGAGCCCAGAATCCCTCACTGTCTCAGAGGGAGCCAT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000200609.2
CDS CCA 72 bp	TGCTGCACCTTCTGCTGGCTGCTCACCCAATTAAACTaGAGCCACAGGACCACTAGTGAAACACTCAAGGAT	+
Preference number: 6 (lower is better) Translates to: CCTFCWLLTQLN*SHRTTSETLKD Trigger: ATCCTTGAGTGTTTCACTAGTGGTCCTGTGGCTCCAGTTTAATTGGGTGAGCAGCCAGCAGAAGGTGCAGCA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000200609.2
CDS TCA 72 bp	ATGTGTAGGGAAACATGCAAGTTGGCTCTATTGAGGTaGGCTGTAAATCTGCCTTCTTCCTTTTCACCATCA	+
Preference number: 6 (lower is better) Translates to: MCRETCKLALLR*AVNLPSSFSPS Trigger: TGATGGTGAAAAGGAAGAAGGCAGATTTACAGCTCACCTCAATAGAGCCAACTTGCATGTTTCCCTACACAT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000200609.2

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