Pregenerated sensors for TRAV6N-6 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000076802

Ensembl transcript IDs: ENSMUST00000103613.3, ENSMUST00000181793.3

Found 7 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
CDS TCA 90 bp	ATTATCAGGGACTTGCTTTCTGAGACAGTCACTTGGCCTTCTGTTTaGGTCACGGAATCTCCATGGGTCCTTCCCAGTATGAGAAGTATC	+
Preference number: 5 (lower is better) Translates to: IIRDLLSETVTWPSV*VTESPWVLPSMRSI Trigger: GATACTTCTCATACTGGGAAGGACCCATGGAGATTCCGTGACTCAAACAGAAGGCCAAGTGACTGTCTCAGAAAGCAAGTCCCTGATAAT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000181793.3
CDS GCA 90 bp	AACCTATGCTTGTGGCTGAATACGTGCAATTTATTATCAGGGACTTaGTTTCTGAGACAGTCACTTGGCCTTCTGTTTGAGTCACGGAAT	+
Preference number: 5 (lower is better) Translates to: NLCLWLNTCNLLSGT*FLRQSLGLLFESRN Trigger: ATTCCGTGACTCAAACAGAAGGCCAAGTGACTGTCTCAGAAAGCAAGTCCCTGATAATAAATTGCACGTATTCAGCCACAAGCATAGGTT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000103613.3 ENSMUST00000181793.3
CDS CCA 72 bp	TCTGCAAGTGGAAGGAGGTGGCTTCTTTATTGTATGTaGCTTCAAACCCTCTGCTGCTTCCCTTCTGGCCAG	+
Preference number: 6 (lower is better) Translates to: SASGRRWLLYCM*LQTLCCFPSGQ Trigger: CTGGCCAGAAGGGAAGCAGCAGAGGGTTTGAAGCCACATACAATAAAGAAGCCACCTCCTTCCACTTGCAGA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000103613.3 ENSMUST00000181793.3
CDS TCA 72 bp	GACTTGCTTTCTGAGACAGTCACTTGGCCTTCTGTTTaGGTCACGGAATCTCCATGGGTCCTTCCCAGTATG	+
Preference number: 6 (lower is better) Translates to: DLLSETVTWPSV*VTESPWVLPSM Trigger: CATACTGGGAAGGACCCATGGAGATTCCGTGACTCAAACAGAAGGCCAAGTGACTGTCTCAGAAAGCAAGTC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000181793.3
CDS GCA 72 bp	TACACAGCCGAGTCTGACTCTTGCACTGAGGCTTTCTaGAAGTGGAAGGAGGTGGCTTCTTTATTGTATGTG	+
Preference number: 6 (lower is better) Translates to: YTAESDSCTEAF*KWKEVASLLYV Trigger: CACATACAATAAAGAAGCCACCTCCTTCCACTTGCAGAAAGCCTCAGTGCAAGAGTCAGACTCGGCTGTGTA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000103613.3 ENSMUST00000181793.3
CDS GCA 72 bp	TTGTGGCTGAATACGTGCAATTTATTATCAGGGACTTaGTTTCTGAGACAGTCACTTGGCCTTCTGTTTGAG	+
Preference number: 6 (lower is better) Translates to: LWLNTCNLLSGT*FLRQSLGLLFE Trigger: CTCAAACAGAAGGCCAAGTGACTGTCTCAGAAAGCAAGTCCCTGATAATAAATTGCACGTATTCAGCCACAA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000103613.3 ENSMUST00000181793.3
CDS TCA 72 bp	ATACCAGAAAAGATTAGGGTAACCTATGCTTGTGGCTaGATACGTGCAATTTATTATCAGGGACTTGCTTTC	+
Preference number: 6 (lower is better) Translates to: IPEKIRVTYACG*IRAIYYQGLAF Trigger: GAAAGCAAGTCCCTGATAATAAATTGCACGTATTCAGCCACAAGCATAGGTTACCCTAATCTTTTCTGGTAT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000103613.3 ENSMUST00000181793.3

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