Pregenerated sensors for TRAV6D-5 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000095426Ensembl transcript IDs: ENSMUST00000180687.3
Found 5 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS GCA 90 bp | CAGACAATGTCACTGGACCTTTTGTCTGAGTCACCGAGTCTCCATTaGTTTCTCCAAGCATTAGGAAGAGTAGAATCCCCAGTTCAGGAC | + |
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Preference number: 5 (lower is better) Translates to: QTMSLDLLSESPSLH*FLQALGRVESPVQD Trigger: GTCCTGAACTGGGGATTCTACTCTTCCTAATGCTTGGAGAAAGCAATGGAGACTCGGTGACTCAGACAAAAGGTCCAGTGACATTGTCTG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000180687.3 |
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| CDS TCA 90 bp | ACAGTCAGAGAAGTCCCTTCAGACAATGTCACTGGACCTTTTGTCTaGGTCACCGAGTCTCCATTGCTTTCTCCAAGCATTAGGAAGAGT | + |
|
Preference number: 5 (lower is better) Translates to: TVREVPSDNVTGPFV*VTESPLLSPSIRKS Trigger: ACTCTTCCTAATGCTTGGAGAAAGCAATGGAGACTCGGTGACTCAGACAAAAGGTCCAGTGACATTGTCTGAAGGGACTTCTCTGACTGT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000180687.3 |
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| CDS GCA 72 bp | TACACAGCCGAGTCTGACTCCTGCACTGAGGCTTTCTaGAAGTGGAAGGAGGTGGTCCCTTTATCATACGTA | + |
|
Preference number: 6 (lower is better) Translates to: YTAESDSCTEAF*KWKEVVPLSYV Trigger: TACGTATGATAAAGGGACCACCTCCTTCCACTTGCAGAAAGCCTCAGTGCAGGAGTCAGACTCGGCTGTGTA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000180687.3 |
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| CDS GCA 72 bp | TCACTGGACCTTTTGTCTGAGTCACCGAGTCTCCATTaGTTTCTCCAAGCATTAGGAAGAGTAGAATCCCCA | + |
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Preference number: 6 (lower is better) Translates to: SLDLLSESPSLH*FLQALGRVESP Trigger: TGGGGATTCTACTCTTCCTAATGCTTGGAGAAAGCAATGGAGACTCGGTGACTCAGACAAAAGGTCCAGTGA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000180687.3 |
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| CDS CAA 72 bp | TCAGAGAAGTCCCTTCAGACAATGTCACTGGACCTTTaGTCTGAGTCACCGAGTCTCCATTGCTTTCTCCAA | + |
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Preference number: 6 (lower is better) Translates to: SEKSLQTMSLDL*SESPSLHCFLQ Trigger: TTGGAGAAAGCAATGGAGACTCGGTGACTCAGACAAAAGGTCCAGTGACATTGTCTGAAGGGACTTCTCTGA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000180687.3 |
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