Pregenerated sensors for TRAV6D-4 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000095387

Ensembl transcript IDs: ENSMUST00000180717.3, ENSMUST00000183820.2

Found 3 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
CDS TCA 72 bp	GTTTCTGGGTCACTGAATCTCCGTGGGTCTCAAGCATaGACAGCAGCATCGCAGTCACTAAAACTGGAGAAG	+
Preference number: 6 (lower is better) Translates to: VSGSLNLRGSQA*TAASQSLKLEK Trigger: CTTCTCCAGTTTTAGTGACTGCGATGCTGCTGTTCATGCTTGAGACCCACGGAGATTCAGTGACCCAGAAAC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000183820.2
CDS CAA 90 bp	CCTTTGTCATATGTAGCTTCAAAGCCTCTGCTGATTCCCTTGTTGTaGGCAGTTGTGACTTTCAGAAGGAGCTGTGGACCTTGTCCAGGA	+
Preference number: 6 (lower is better) Translates to: PLSYVASKPLLIPLL*AVVTFRRSCGPCPG Trigger: TCCTGGACAAGGTCCACAGCTCCTTCTGAAAGTCACAACTGCCAACAACAAGGGAATCAGCAGAGGCTTTGAAGCTACATATGACAAAGG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000180717.3 ENSMUST00000183820.2
CDS CAA 72 bp	TATGTAGCTTCAAAGCCTCTGCTGATTCCCTTGTTGTaGGCAGTTGTGACTTTCAGAAGGAGCTGTGGACCT	+
Preference number: 6 (lower is better) Translates to: YVASKPLLIPLL*AVVTFRRSCGP Trigger: AGGTCCACAGCTCCTTCTGAAAGTCACAACTGCCAACAACAAGGGAATCAGCAGAGGCTTTGAAGCTACATA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000180717.3 ENSMUST00000183820.2

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