Pregenerated sensors for TRAV6-4 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000094468

Ensembl transcript IDs: ENSMUST00000180711.3, ENSMUST00000184650.2

Found 10 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
CDS CAA 72 bp	ACTGAGGCTTTCTGCAAGTGGAAGGACGTGGTCCCTTaGTCATATGTAGCTTCAAAGCCTCTGCTGATTCCC	+
Preference number: 6 (lower is better) Translates to: TEAFCKWKDVVP*SYVASKPLLIP Trigger: GGGAATCAGCAGAGGCTTTGAAGCTACATATGACAAAGGGACCACGTCCTTCCACTTGCAGAAAGCCTCAGT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000180711.3 ENSMUST00000184650.2
CDS CAA 90 bp	GACTCCTGCACTGAGGCTTTCTGCAAGTGGAAGGACGTGGTCCCTTaGTCATATGTAGCTTCAAAGCCTCTGCTGATTCCCTTATTGTTG	+
Preference number: 6 (lower is better) Translates to: DSCTEAFCKWKDVVP*SYVASKPLLIPLLL Trigger: CAACAATAAGGGAATCAGCAGAGGCTTTGAAGCTACATATGACAAAGGGACCACGTCCTTCCACTTGCAGAAAGCCTCAGTGCAGGAGTC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000180711.3 ENSMUST00000184650.2
CDS CAA 90 bp	GTCCCTTTGTCATATGTAGCTTCAAAGCCTCTGCTGATTCCCTTATaGTTGGCAGTTGTCACTTTCAGAAGGAGCTGTGGACCTTGTCCA	+
Preference number: 6 (lower is better) Translates to: VPLSYVASKPLLIPL*LAVVTFRRSCGPCP Trigger: TGGACAAGGTCCACAGCTCCTTCTGAAAGTGACAACTGCCAACAATAAGGGAATCAGCAGAGGCTTTGAAGCTACATATGACAAAGGGAC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000180711.3 ENSMUST00000184650.2
CDS TCA 72 bp	GTTTCTGGGTCACTGAATCTCCGTGGGTCTCAAGCATaGACAGCAGCATCACAGTTACTAAAACTGGAGAAG	+
Preference number: 6 (lower is better) Translates to: VSGSLNLRGSQA*TAASQLLKLEK Trigger: CTTCTCCAGTTTTAGTAACTGTGATGCTGCTGTTCATGCTTGAGACCCACGGAGATTCAGTGACCCAGAAAC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000184650.2
CDS CAA 90 bp	CCTTTGTCATATGTAGCTTCAAAGCCTCTGCTGATTCCCTTATTGTaGGCAGTTGTCACTTTCAGAAGGAGCTGTGGACCTTGTCCAAGA	+
Preference number: 6 (lower is better) Translates to: PLSYVASKPLLIPLL*AVVTFRRSCGPCPR Trigger: TCTTGGACAAGGTCCACAGCTCCTTCTGAAAGTGACAACTGCCAACAATAAGGGAATCAGCAGAGGCTTTGAAGCTACATATGACAAAGG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000180711.3 ENSMUST00000184650.2
CDS TCA 72 bp	TCACTGAATCTCCGTGGGTCTTTCTCATCCCAAGCATaGACAGCAGCATCACAGTTACTAAAACTGGAGAAG	+
Preference number: 6 (lower is better) Translates to: SLNLRGSFSSQA*TAASQLLKLEK Trigger: CTTCTCCAGTTTTAGTAACTGTGATGCTGCTGTTCATGCTTGGGATGAGAAAGACCCACGGAGATTCAGTGA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000180711.3
CDS CAA 72 bp	TATGTAGCTTCAAAGCCTCTGCTGATTCCCTTATTGTaGGCAGTTGTCACTTTCAGAAGGAGCTGTGGACCT	+
Preference number: 6 (lower is better) Translates to: YVASKPLLIPLL*AVVTFRRSCGP Trigger: AGGTCCACAGCTCCTTCTGAAAGTGACAACTGCCAACAATAAGGGAATCAGCAGAGGCTTTGAAGCTACATA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000180711.3 ENSMUST00000184650.2
CDS CAA 72 bp	TCATATGTAGCTTCAAAGCCTCTGCTGATTCCCTTATaGTTGGCAGTTGTCACTTTCAGAAGGAGCTGTGGA	+
Preference number: 6 (lower is better) Translates to: SYVASKPLLIPL*LAVVTFRRSCG Trigger: TCCACAGCTCCTTCTGAAAGTGACAACTGCCAACAATAAGGGAATCAGCAGAGGCTTTGAAGCTACATATGA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000180711.3 ENSMUST00000184650.2
CDS CAA 90 bp	GGCAGTTGTCACTTTCAGAAGGAGCTGTGGACCTTGTCCAAGATATaGGACATACCACAAAAGAGTTGGGTATGTTGTGGTAGAATAAGT	+
Preference number: 6 (lower is better) Translates to: GSCHFQKELWTLSKI*DIPQKSWVCCGRIS Trigger: ACTTATTCTACCACAACATACCCAACTCTTTTGTGGTATGTCCAATATCTTGGACAAGGTCCACAGCTCCTTCTGAAAGTGACAACTGCC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000180711.3 ENSMUST00000184650.2
CDS CCA 72 bp	ACTTTCAGAAGGAGCTGTGGACCTTGTCCAAGATATTaGACATACCACAAAAGAGTTGGGTATGTTGTGGTA	+
Preference number: 6 (lower is better) Translates to: TFRRSCGPCPRY*TYHKRVGYVVV Trigger: TACCACAACATACCCAACTCTTTTGTGGTATGTCCAATATCTTGGACAAGGTCCACAGCTCCTTCTGAAAGT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000180711.3 ENSMUST00000184650.2

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