Pregenerated sensors for TRAV5N-4 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000096168

Ensembl transcript IDs: ENSMUST00000179997.2

Found 3 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
CDS GCA 72 bp	CTGGATCCCTCCTGGACTCTCAGGATGGAAGGAAGCTaGTCCACCTGCTCACCTTGGCTCATCCCATCCAGC	+
Preference number: 6 (lower is better) Translates to: LDPSWTLRMEGS*STCSPWLIPSS Trigger: GCTGGATGGGATGAGCCAAGGTGAGCAGGTGGAGCAGCTTCCTTCCATCCTGAGAGTCCAGGAGGGATCCAG 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000179997.2
CDS CCA 72 bp	CTCAGGATGGAAGGAAGCTGCTCCACCTGCTCACCTTaGCTCATCCCATCCAGCTGCAGCCATAGAAACATG	+
Preference number: 6 (lower is better) Translates to: LRMEGSCSTCSP*LIPSSCSHRNM Trigger: CATGTTTCTATGGCTGCAGCTGGATGGGATGAGCCAAGGTGAGCAGGTGGAGCAGCTTCCTTCCATCCTGAG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000179997.2
CDS GCA 72 bp	TGCTCCACCTGCTCACCTTGGCTCATCCCATCCAGCTaGAGCCATAGAAACATGAATAATGTAGGAGCATAT	+
Preference number: 6 (lower is better) Translates to: CSTCSPWLIPSS*SHRNMNNVGAY Trigger: ATATGCTCCTACATTATTCATGTTTCTATGGCTGCAGCTGGATGGGATGAGCCAAGGTGAGCAGGTGGAGCA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000179997.2

---

If you would like us to post a table for your organism of interest, or have questions, please reach out to eerik at stanford dot edu or xjgao at stanford.edu