Pregenerated sensors for TRAV5-1 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000076761

Ensembl transcript IDs: ENSMUST00000103570.2

Found 5 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
CDS GCA 90 bp	CTGGCTCCCTCCTGGACAATCAGGGAGGAAGGGAGCTGTTCCACCTaGTCACCTTGGCTCTTCCAGTCCATCTGTAGCCAGAAGAAAATA	+
Preference number: 5 (lower is better) Translates to: LAPSWTIREEGSCST*SPWLFQSICSQKKI Trigger: TATTTTCTTCTGGCTACAGATGGACTGGAAGAGCCAAGGTGAGCAGGTGGAACAGCTCCCTTCCTCCCTGATTGTCCAGGAGGGAGCCAG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000103570.2
CDS CCA 90 bp	TCCTGGACAATCAGGGAGGAAGGGAGCTGTTCCACCTGCTCACCTTaGCTCTTCCAGTCCATCTGTAGCCAGAAGAAAATAAATAAAGCA	+
Preference number: 5 (lower is better) Translates to: SWTIREEGSCSTCSP*LFQSICSQKKINKA Trigger: TGCTTTATTTATTTTCTTCTGGCTACAGATGGACTGGAAGAGCCAAGGTGAGCAGGTGGAACAGCTCCCTTCCTCCCTGATTGTCCAGGA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000103570.2
CDS GCA 72 bp	TCCTGGACAATCAGGGAGGAAGGGAGCTGTTCCACCTaGTCACCTTGGCTCTTCCAGTCCATCTGTAGCCAG	+
Preference number: 6 (lower is better) Translates to: SWTIREEGSCST*SPWLFQSICSQ Trigger: CTGGCTACAGATGGACTGGAAGAGCCAAGGTGAGCAGGTGGAACAGCTCCCTTCCTCCCTGATTGTCCAGGA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000103570.2
CDS TCA 72 bp	AAGGGTGAGTCTTTGAGTCTGCTTTCTTTCCATATTTaGACGGATGTCTATGATGAACTGAAGACGCTTCCC	+
Preference number: 6 (lower is better) Translates to: KGESLSLLSFHI*TDVYDELKTLP Trigger: GGGAAGCGTCTTCAGTTCATCATAGACATCCGTTCAAATATGGAAAGAAAGCAGACTCAAAGACTCACCCTT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000103570.2
CDS TCA 72 bp	GGGAAAGGTGTTTGGTTTTCTTATCAAATAAAAGGGTaGGTCTTTGAGTCTGCTTTCTTTCCATATTTGAAC	+
Preference number: 6 (lower is better) Translates to: GKGVWFSYQIKG*VFESAFFPYLN Trigger: GTTCAAATATGGAAAGAAAGCAGACTCAAAGACTCACCCTTTTATTTGATAAGAAAACCAAACACCTTTCCC 36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000103570.2

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