Pregenerated sensors for TRAV4D-3 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000093939

Ensembl transcript IDs: ENSMUST00000103592.2

Found 5 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
CDS GCA 90 bp	AGAGCAGAATTGGTTCCCTCTTGGAGACTCAGCGCTGAGGGACTTTaGTTCACCTTATCTCCGCTCACCCAGCAAATCTGCACCCACAGA	+
Preference number: 5 (lower is better) Translates to: RAELVPSWRLSAEGL*FTLSPLTQQICTHR Trigger: TCTGTGGGTGCAGATTTGCTGGGTGAGCGGAGATAAGGTGAAGCAAAGTCCCTCAGCGCTGAGTCTCCAAGAGGGAACCAATTCTGCTCT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000103592.2
CDS GCA 72 bp	CTTTGCTTCACCTTATCTCCGCTCACCCAGCAAATCTaGACCCACAGAATCCCCAGCACAGCTCCCAGGTTC	+
Preference number: 6 (lower is better) Translates to: LCFTLSPLTQQI*THRIPSTAPRF Trigger: GAACCTGGGAGCTGTGCTGGGGATTCTGTGGGTGCAGATTTGCTGGGTGAGCGGAGATAAGGTGAAGCAAAG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000103592.2
CDS TCA 72 bp	CAGAGCAGAATTGGTTCCCTCTTGGAGACTCAGCGCTaGGGGACTTTGCTTCACCTTATCTCCGCTCACCCA	+
Preference number: 6 (lower is better) Translates to: QSRIGSLLETQR*GTLLHLISAHP Trigger: TGGGTGAGCGGAGATAAGGTGAAGCAAAGTCCCTCAGCGCTGAGTCTCCAAGAGGGAACCAATTCTGCTCTG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000103592.2
CDS GCA 72 bp	TTGGTTCCCTCTTGGAGACTCAGCGCTGAGGGACTTTaGTTCACCTTATCTCCGCTCACCCAGCAAATCTGC	+
Preference number: 6 (lower is better) Translates to: LVPSWRLSAEGL*FTLSPLTQQIC Trigger: GCAGATTTGCTGGGTGAGCGGAGATAAGGTGAAGCAAAGTCCCTCAGCGCTGAGTCTCCAAGAGGGAACCAA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000103592.2
CDS GCA 72 bp	TTCATGAGGCTGCCCCTGGGATTCTGTAGGAACCACTaGACAGTTGTCGCAGCGATAGAAAAATTGCATCTC	+
Preference number: 6 (lower is better) Translates to: FMRLPLGFCRNH*TVVAAIEKLHL Trigger: GAGATGCAATTTTTCTATCGCTGCGACAACTGTGCAGTGGTTCCTACAGAATCCCAGGGGCAGCCTCATGAA 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000103592.2

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