Pregenerated sensors for TRAV4-3 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000093966

Ensembl transcript IDs: ENSMUST00000103655.3

Found 4 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
CDS GCA 72 bp	CTTTGTTTCACCTTATCTCCGCTCACCCAGCAAATCTaGACCCACAGAATCCCCAGCACAGCTCCCAGGTTC	+
Preference number: 6 (lower is better) Translates to: LCFTLSPLTQQI*THRIPSTAPRF Trigger: GAACCTGGGAGCTGTGCTGGGGATTCTGTGGGTGCAGATTTGCTGGGTGAGCGGAGATAAGGTGAAACAAAG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000103655.3
CDS GCA 72 bp	TTGATGAGGCTGCCCCTGGGATTCTGTAGGAACCACTaGACAGTTGTCGCGGCGATAGAAAAATTGCATCTC	+
Preference number: 6 (lower is better) Translates to: LMRLPLGFCRNH*TVVAAIEKLHL Trigger: GAGATGCAATTTTTCTATCGCCGCGACAACTGTGCAGTGGTTCCTACAGAATCCCAGGGGCAGCCTCATCAA 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000103655.3
CDS CAA 90 bp	GGATTCTGTAGGAACCACTGCACAGTTGTCGCGGCGATAGAAAAATaGCATCTCAGAGCAGAATTGGTTCCTTCTTGGAGACTCAGCGCT	+
Preference number: 6 (lower is better) Translates to: GFCRNHCTVVAAIEK*HLRAELVPSWRLSA Trigger: AGCGCTGAGTCTCCAAGAAGGAACCAATTCTGCTCTGAGATGCAATTTTTCTATCGCCGCGACAACTGTGCAGTGGTTCCTACAGAATCC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000103655.3
CDS CAA 72 bp	AGGAACCACTGCACAGTTGTCGCGGCGATAGAAAAATaGCATCTCAGAGCAGAATTGGTTCCTTCTTGGAGA	+
Preference number: 6 (lower is better) Translates to: RNHCTVVAAIEK*HLRAELVPSWR Trigger: TCTCCAAGAAGGAACCAATTCTGCTCTGAGATGCAATTTTTCTATCGCCGCGACAACTGTGCAGTGGTTCCT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000103655.3

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