Pregenerated sensors for TRAV3D-3 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000093953

Ensembl transcript IDs: ENSMUST00000103599.3, ENSMUST00000196023.2

Found 5 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
CDS GCA 72 bp	TGCTCCACCTGCTCGCCTCTGCTCACACAGTTCAGCTaGAGCCAGAAGCACAGGAACAAAGGTCCAGTCACT	+
Preference number: 6 (lower is better) Translates to: CSTCSPLLTQFS*SQKHRNKGPVT Trigger: AGTGACTGGACCTTTGTTCCTGTGCTTCTGGCTGCAGCTGAACTGTGTGAGCAGAGGCGAGCAGGTGGAGCA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000196023.2
CDS CAA 72 bp	AACCTTCATAAGCAACTGAAGACCTGCCCCCGGCTCTaGCTTGTACCAGAAGAAGTAATAACTGTTAGGGTC	+
Preference number: 6 (lower is better) Translates to: NLHKQLKTCPRL*LVPEEVITVRV Trigger: GACCCTAACAGTTATTACTTCTTCTGGTACAAGCAAGAGCCGGGGGCAGGTCTTCAGTTGCTTATGAAGGTT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000103599.3 ENSMUST00000196023.2
CDS CAA 72 bp	CCAGGATGGGCAGCTGTGAGGTTCAGAGAGAGTTGTTaGTCTTTCTTGTTCAGTAGGACAGTGAATCCTTGT	+
Preference number: 6 (lower is better) Translates to: PGWAAVRFRESC*SFLFSRTVNPC Trigger: ACAAGGATTCACTGTCCTACTGAACAAGAAAGACAAACAACTCTCTCTGAACCTCACAGCTGCCCATCCTGG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000103599.3 ENSMUST00000196023.2
CDS TCA 72 bp	TTTATTTCCGTACTTGAGAAAACCTTCATAAGCAACTaGAGACCTGCCCCCGGCTCTTGCTTGTACCAGAAG	+
Preference number: 6 (lower is better) Translates to: FISVLEKTFISN*RPAPGSCLYQK Trigger: CTTCTGGTACAAGCAAGAGCCGGGGGCAGGTCTTCAGTTGCTTATGAAGGTTTTCTCAAGTACGGAAATAAA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000103599.3 ENSMUST00000196023.2
CDS TCA 72 bp	GAGAGAGTTGTTTGTCTTTCTTGTTCAGTAGGACAGTaGATCCTTGTCCTTCGTTTATTTCCGTACTTGAGA	+
Preference number: 6 (lower is better) Translates to: ERVVCLSCSVGQ*ILVLRLFPYLR Trigger: TCTCAAGTACGGAAATAAACGAAGGACAAGGATTCACTGTCCTACTGAACAAGAAAGACAAACAACTCTCTC 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000103599.3 ENSMUST00000196023.2