Pregenerated sensors for TRAV3-3 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000094828

Ensembl transcript IDs: ENSMUST00000181768.3, ENSMUST00000183835.2

Found 5 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
CDS TCA 72 bp	AGAAGTACGCGGCTGAGTCCCCAGGATGGGCAGCTGTaGGGTTCAGAGAGAGTCGTTTGTCTTTCTTGTTCA	+
Preference number: 6 (lower is better) Translates to: RSTRLSPQDGQL*GSERVVCLSCS Trigger: TGAACAAGAAAGACAAACGACTCTCTCTGAACCTCACAGCTGCCCATCCTGGGGACTCAGCCGCGTACTTCT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000181768.3 ENSMUST00000183835.2
CDS CAA 90 bp	GCTGAGTCCCCAGGATGGGCAGCTGTGAGGTTCAGAGAGAGTCGTTaGTCTTTCTTGTTCAGTAGGACAGTGAATCCTTGTCCTTCGTTT	+
Preference number: 6 (lower is better) Translates to: AESPGWAAVRFRESR*SFLFSRTVNPCPSF Trigger: AAACGAAGGACAAGGATTCACTGTCCTACTGAACAAGAAAGACAAACGACTCTCTCTGAACCTCACAGCTGCCCATCCTGGGGACTCAGC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000181768.3 ENSMUST00000183835.2
CDS CAA 72 bp	AACCTTCATAAGCAACTGAAGACTTGCCCCCGGCTCTaGCTTGTACCAGAAGAAGTAATAACTGTTAGGGTC	+
Preference number: 6 (lower is better) Translates to: NLHKQLKTCPRL*LVPEEVITVRV Trigger: GACCCTAACAGTTATTACTTCTTCTGGTACAAGCAAGAGCCGGGGGCAAGTCTTCAGTTGCTTATGAAGGTT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000181768.3 ENSMUST00000183835.2
CDS TCA 72 bp	TTTATTTCCGTACTTGAGAAAACCTTCATAAGCAACTaGAGACTTGCCCCCGGCTCTTGCTTGTACCAGAAG	+
Preference number: 6 (lower is better) Translates to: FISVLEKTFISN*RLAPGSCLYQK Trigger: CTTCTGGTACAAGCAAGAGCCGGGGGCAAGTCTTCAGTTGCTTATGAAGGTTTTCTCAAGTACGGAAATAAA 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000181768.3 ENSMUST00000183835.2
CDS TCA 72 bp	GAGAGAGTCGTTTGTCTTTCTTGTTCAGTAGGACAGTaGATCCTTGTCCTTCGTTTATTTCCGTACTTGAGA	+
Preference number: 6 (lower is better) Translates to: ERVVCLSCSVGQ*ILVLRLFPYLR Trigger: TCTCAAGTACGGAAATAAACGAAGGACAAGGATTCACTGTCCTACTGAACAAGAAAGACAAACGACTCTCTC 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000181768.3 ENSMUST00000183835.2

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