Pregenerated sensors for TRAV3-1 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000076760

Ensembl transcript IDs: ENSMUST00000103569.3

Found 4 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
CDS GCA 72 bp	TGCTCCACCTGCTCGCCTCTGCTCACACAGTTCAGCTaGAGCCAGAAGCACAGCAACAAAGGTCCAGTCACT	+
Preference number: 6 (lower is better) Translates to: CSTCSPLLTQFS*SQKHSNKGPVT Trigger: AGTGACTGGACCTTTGTTGCTGTGCTTCTGGCTGCAGCTGAACTGTGTGAGCAGAGGCGAGCAGGTGGAGCA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000103569.3
CDS TCA 72 bp	TTTCTGTCCACATTTGAAAGGACACTCATAAGCAACTaGAGACCTGCCCCCGCCTCTTGCTTGTACCAGGAG	+
Preference number: 6 (lower is better) Translates to: FLSTFERTLISN*RPAPASCLYQE Trigger: CTCCTGGTACAAGCAAGAGGCGGGGGCAGGTCTTCAGTTGCTTATGAGTGTCCTTTCAAATGTGGACAGAAA 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000103569.3
CDS CAA 72 bp	CCAGGATGGGCAGCTGTGAGGTTCAGAGAGAGTCGTTaGTCTTTCTTGTTCAGTAAGACAGTGAGTCCTTGT	+
Preference number: 6 (lower is better) Translates to: PGWAAVRFRESR*SFLFSKTVSPC Trigger: ACAAGGACTCACTGTCTTACTGAACAAGAAAGACAAACGACTCTCTCTGAACCTCACAGCTGCCCATCCTGG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000103569.3
CDS CAA 90 bp	GCTGAGTCCCCAGGATGGGCAGCTGTGAGGTTCAGAGAGAGTCGTTaGTCTTTCTTGTTCAGTAAGACAGTGAGTCCTTGTTCTTCTTTT	+
Preference number: 6 (lower is better) Translates to: AESPGWAAVRFRESR*SFLFSKTVSPCSSF Trigger: AAAAGAAGAACAAGGACTCACTGTCTTACTGAACAAGAAAGACAAACGACTCTCTCTGAACCTCACAGCTGCCCATCCTGGGGACTCAGC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000103569.3

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