Pregenerated sensors for TRAV2 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000076759

Ensembl transcript IDs: ENSMUST00000103568.3, ENSMUST00000196939.2

Found 4 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
CDS CCA 90 bp	CACTTCATTTACCACATAGTCCTTATATCCTTGAATGATAAACTGTaGTCCCTGGTGGGGAACCTGTCGGTACCAGTAGATGTACTCGCT	+
Preference number: 5 (lower is better) Translates to: HFIYHIVLISLNDKL*SLVGNLSVPVDVLA Trigger: AGCGAGTACATCTACTGGTACCGACAGGTTCCCCACCAGGGACCACAGTTTATCATTCAAGGATATAAGGACTATGTGGTAAATGAAGTG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000103568.3 ENSMUST00000196939.2
CDS GCA 90 bp	CAGGCTCAGAGTGCTGAGCTTCCGGTCAGCAGAGATAAACAGAGATaGCACTTCATTTACCACATAGTCCTTATATCCTTGAATGATAAA	+
Preference number: 5 (lower is better) Translates to: QAQSAELPVSRDKQR*HFIYHIVLISLNDK Trigger: TTTATCATTCAAGGATATAAGGACTATGTGGTAAATGAAGTGGCATCTCTGTTTATCTCTGCTGACCGGAAGCTCAGCACTCTGAGCCTG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000103568.3 ENSMUST00000196939.2
CDS CAA 90 bp	GATAAACAGAGATGCCACTTCATTTACCACATAGTCCTTATATCCTaGAATGATAAACTGTGGTCCCTGGTGGGGAACCTGTCGGTACCA	+
Preference number: 6 (lower is better) Translates to: DKQRCHFIYHIVLIS*NDKLWSLVGNLSVP Trigger: TGGTACCGACAGGTTCCCCACCAGGGACCACAGTTTATCATTCAAGGATATAAGGACTATGTGGTAAATGAAGTGGCATCTCTGTTTATC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000103568.3 ENSMUST00000196939.2
CDS GCA 72 bp	AGTGCTGAGCTTCCGGTCAGCAGAGATAAACAGAGATaGCACTTCATTTACCACATAGTCCTTATATCCTTG	+
Preference number: 6 (lower is better) Translates to: SAELPVSRDKQR*HFIYHIVLISL Trigger: CAAGGATATAAGGACTATGTGGTAAATGAAGTGGCATCTCTGTTTATCTCTGCTGACCGGAAGCTCAGCACT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000103568.3 ENSMUST00000196939.2