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Pregenerated sensors for TRAV19 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000076862

Ensembl transcript IDs: ENSMUST00000103674.6

Found 12 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
CDS CCA 90 bp TTTAACTTGCTGGCCACTAGTCTTCTGTTGACTCTTTACCCATTCTaGCCGCAGGCACAGAACCAACAGCAAGGCCTTCAGGAAGCCAGT +
Preference number: 5 (lower is better)
Translates to: FNLLATSLLLTLYPF*PQAQNQQQGLQEAS
Trigger: ACTGGCTTCCTGAAGGCCTTGCTGTTGGTTCTGTGCCTGCGGCCAGAATGGGTAAAGAGTCAACAGAAGACTAGTGGCCAGCAAGTTAAA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000103674.6
CDS TCA 90 bp AGCGATGGAGAGCTTTGTTTAACTTGCTGGCCACTAGTCTTCTGTTaGCTCTTTACCCATTCTGGCCGCAGGCACAGAACCAACAGCAAG +
Preference number: 5 (lower is better)
Translates to: SDGELCLTCWPLVFC*LFTHSGRRHRTNSK
Trigger: CTTGCTGTTGGTTCTGTGCCTGCGGCCAGAATGGGTAAAGAGTCAACAGAAGACTAGTGGCCAGCAAGTTAAACAAAGCTCTCCATCGCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000103674.6
CDS CCA 90 bp GTCACAATTCAGGATCGATATCCCTCCCTCTTGAACAGTCAGCGATaGAGAGCTTTGTTTAACTTGCTGGCCACTAGTCTTCTGTTGACT +
Preference number: 5 (lower is better)
Translates to: VTIQDRYPSLLNSQR*RALFNLLATSLLLT
Trigger: AGTCAACAGAAGACTAGTGGCCAGCAAGTTAAACAAAGCTCTCCATCGCTGACTGTTCAAGAGGGAGGGATATCGATCCTGAATTGTGAC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000103674.6
CDS CCA 72 bp CTGGCCACTAGTCTTCTGTTGACTCTTTACCCATTCTaGCCGCAGGCACAGAACCAACAGCAAGGCCTTCAG +
Preference number: 6 (lower is better)
Translates to: LATSLLLTLYPF*PQAQNQQQGLQ
Trigger: CTGAAGGCCTTGCTGTTGGTTCTGTGCCTGCGGCCAGAATGGGTAAAGAGTCAACAGAAGACTAGTGGCCAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000103674.6
CDS CAA 90 bp CAGCGATGGAGAGCTTTGTTTAACTTGCTGGCCACTAGTCTTCTGTaGACTCTTTACCCATTCTGGCCGCAGGCACAGAACCAACAGCAA +
Preference number: 6 (lower is better)
Translates to: QRWRALFNLLATSLL*TLYPFWPQAQNQQQ
Trigger: TTGCTGTTGGTTCTGTGCCTGCGGCCAGAATGGGTAAAGAGTCAACAGAAGACTAGTGGCCAGCAAGTTAAACAAAGCTCTCCATCGCTG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000103674.6
CDS TCA 72 bp GAGCTTTGTTTAACTTGCTGGCCACTAGTCTTCTGTTaGCTCTTTACCCATTCTGGCCGCAGGCACAGAACC +
Preference number: 6 (lower is better)
Translates to: ELCLTCWPLVFC*LFTHSGRRHRT
Trigger: GGTTCTGTGCCTGCGGCCAGAATGGGTAAAGAGTCAACAGAAGACTAGTGGCCAGCAAGTTAAACAAAGCTC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000103674.6
CDS CAA 90 bp TATCCCTCCCTCTTGAACAGTCAGCGATGGAGAGCTTTGTTTAACTaGCTGGCCACTAGTCTTCTGTTGACTCTTTACCCATTCTGGCCG +
Preference number: 6 (lower is better)
Translates to: YPSLLNSQRWRALFN*LATSLLLTLYPFWP
Trigger: CGGCCAGAATGGGTAAAGAGTCAACAGAAGACTAGTGGCCAGCAAGTTAAACAAAGCTCTCCATCGCTGACTGTTCAAGAGGGAGGGATA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000103674.6
CDS CCA 72 bp CAGGATCGATATCCCTCCCTCTTGAACAGTCAGCGATaGAGAGCTTTGTTTAACTTGCTGGCCACTAGTCTT +
Preference number: 6 (lower is better)
Translates to: QDRYPSLLNSQR*RALFNLLATSL
Trigger: AAGACTAGTGGCCAGCAAGTTAAACAAAGCTCTCCATCGCTGACTGTTCAAGAGGGAGGGATATCGATCCTG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000103674.6
CDS CAA 72 bp GAGGCTGTGATGTGCAGTGAGAAGTGTTTGCCGCTTTaGTTCAAGAAAACTGTGAGTCTTCCGTCTTCCCTC +
Preference number: 6 (lower is better)
Translates to: EAVMCSEKCLPL*FKKTVSLPSSL
Trigger: GAGGGAAGACGGAAGACTCACAGTTTTCTTGAACAAAAGCGGCAAACACTTCTCACTGCACATCACAGCCTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000103674.6
CDS CAA 90 bp CAGGATCGATATCCCTCCCTCTTGAACAGTCAGCGATGGAGAGCTTaGTTTAACTTGCTGGCCACTAGTCTTCTGTTGACTCTTTACCCA +
Preference number: 6 (lower is better)
Translates to: QDRYPSLLNSQRWRA*FNLLATSLLLTLYP
Trigger: TGGGTAAAGAGTCAACAGAAGACTAGTGGCCAGCAAGTTAAACAAAGCTCTCCATCGCTGACTGTTCAAGAGGGAGGGATATCGATCCTG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000103674.6
CDS CAA 90 bp CATATCATTCTCGTAGTCACAATTCAGGATCGATATCCCTCCCTCTaGAACAGTCAGCGATGGAGAGCTTTGTTTAACTTGCTGGCCACT +
Preference number: 6 (lower is better)
Translates to: HIILVVTIQDRYPSL*NSQRWRALFNLLAT
Trigger: AGTGGCCAGCAAGTTAAACAAAGCTCTCCATCGCTGACTGTTCAAGAGGGAGGGATATCGATCCTGAATTGTGACTACGAGAATGATATG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000103674.6
CDS CAA 72 bp CTCTTGAACAGTCAGCGATGGAGAGCTTTGTTTAACTaGCTGGCCACTAGTCTTCTGTTGACTCTTTACCCA +
Preference number: 6 (lower is better)
Translates to: LLNSQRWRALFN*LATSLLLTLYP
Trigger: TGGGTAAAGAGTCAACAGAAGACTAGTGGCCAGCAAGTTAAACAAAGCTCTCCATCGCTGACTGTTCAAGAG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000103674.6