Pregenerated sensors for TRAV18 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000076861

Ensembl transcript IDs: ENSMUST00000103673.11, ENSMUST00000186573.2

Found 5 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
CDS TCA 90 bp	ACCAGTAAAGTTGGGGGAAGGTGGTTGAGGAGCTGCAGCGTGCAGTaGAATCTTGCCCCTCCTGGATACTCAGAAACCGAGGACTCTGCT	+
Preference number: 5 (lower is better) Translates to: TSKVGGRWLRSCSVQ*NLAPPGYSETEDSA Trigger: AGCAGAGTCCTCGGTTTCTGAGTATCCAGGAGGGGCAAGATTTCACTGCACGCTGCAGCTCCTCAACCACCTTCCCCCAACTTTACTGGT 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000103673.11 ENSMUST00000186573.2
CDS TCA 72 bp	GACCTGTCGGTACCAGTAAAGTTGGGGGAAGGTGGTTaGGGAGCTGCAGCGTGCAGTGAAATCTTGCCCCTC	+
Preference number: 6 (lower is better) Translates to: DLSVPVKLGEGG*GAAACSEILPL Trigger: GAGGGGCAAGATTTCACTGCACGCTGCAGCTCCTCAACCACCTTCCCCCAACTTTACTGGTACCGACAGGTC 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000103673.11 ENSMUST00000186573.2
CDS GCA 72 bp	AAGGTGGTTGAGGAGCTGCAGCGTGCAGTGAAATCTTaGCCCTCCTGGATACTCAGAAACCGAGGACTCTGC	+
Preference number: 6 (lower is better) Translates to: KVVEELQRAVKS*PSWILRNRGLC Trigger: GCAGAGTCCTCGGTTTCTGAGTATCCAGGAGGGGCAAGATTTCACTGCACGCTGCAGCTCCTCAACCACCTT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000103673.11 ENSMUST00000186573.2
CDS CCA 72 bp	TACTCAGAAACCGAGGACTCTGCTCCAGCCGTTGAGTaGCCACACGGGCCACTTGATTCCAAAGGAGCAACA	+
Preference number: 6 (lower is better) Translates to: YSETEDSAPAVE*PHGPLDSKGAT Trigger: TGTTGCTCCTTTGGAATCAAGTGGCCCGTGTGGCCACTCAACGGCTGGAGCAGAGTCCTCGGTTTCTGAGTA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000103673.11
CDS CCA 72 bp	TACTCAGAAACCGAGGACTCTGCTCCAGCCGTTGAGTaGCCAGGGCCACTTGATTCCAAAGGAGCAACACAG	+
Preference number: 6 (lower is better) Translates to: YSETEDSAPAVE*PGPLDSKGATQ Trigger: CTGTGTTGCTCCTTTGGAATCAAGTGGCCCTGGCCACTCAACGGCTGGAGCAGAGTCCTCGGTTTCTGAGTA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000186573.2

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