RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for TRAV16N (Mus musculus)

Ensembl gene IDs: ENSMUSG00000076822

Ensembl transcript IDs: ENSMUST00000103633.2, ENSMUST00000199280.2

Found 10 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
CDS GCA 72 bp CTGAGTCTGTGTTACCTTCTGGGCCATGCTGGTTGCTaGAAAACAAATGGAGCCAAAGGCTGCTCCCAACAG +
Preference number: 6 (lower is better)
Translates to: LSLCYLLGHAGC*KTNGAKGCSQQ
Trigger: CTGTTGGGAGCAGCCTTTGGCTCCATTTGTTTTGCAGCAACCAGCATGGCCCAGAAGGTAACACAGACTCAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000103633.2
CDS GCA 72 bp AGTCTGAGTCTGTGTTACCTTCTGGGCCATGCTGGTTaGTGCAAAACAAATGGAGCCAAAGGCTGCTCCCAA +
Preference number: 6 (lower is better)
Translates to: SLSLCYLLGHAG*CKTNGAKGCSQ
Trigger: TTGGGAGCAGCCTTTGGCTCCATTTGTTTTGCAGCAACCAGCATGGCCCAGAAGGTAACACAGACTCAGACT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000103633.2
CDS GCA 72 bp AGTCTGAGTCTGTGTTACCTTCTGGGCCATGCTGGTTaGAAAACAAATGGAGCCAAAGGCTGCTCCCAACAG +
Preference number: 6 (lower is better)
Translates to: SLSLCYLLGHAG*KTNGAKGCSQQ
Trigger: CTGTTGGGAGCAGCCTTTGGCTCCATTTGTTTTGCAACCAGCATGGCCCAGAAGGTAACACAGACTCAGACT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000199280.2
CDS CAA 72 bp AAGTCTGAGTCTGTGTTACCTTCTGGGCCATGCTGGTaGCTGCAAAACAAATGGAGCCAAAGGCTGCTCCCA +
Preference number: 6 (lower is better)
Translates to: KSESVLPSGPCW*LQNKWSQRLLP
Trigger: TGGGAGCAGCCTTTGGCTCCATTTGTTTTGCAGCAACCAGCATGGCCCAGAAGGTAACACAGACTCAGACTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000103633.2
CDS CCA 72 bp TTGAAGTCTGAGTCTGTGTTACCTTCTGGGCCATGCTaGTTGCAAAACAAATGGAGCCAAAGGCTGCTCCCA +
Preference number: 6 (lower is better)
Translates to: LKSESVLPSGPC*LQNKWSQRLLP
Trigger: TGGGAGCAGCCTTTGGCTCCATTTGTTTTGCAACCAGCATGGCCCAGAAGGTAACACAGACTCAGACTTCAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000199280.2
CDS CAA 72 bp AAGTCTGAGTCTGTGTTACCTTCTGGGCCATGCTGGTaGCAAAACAAATGGAGCCAAAGGCTGCTCCCAACA +
Preference number: 6 (lower is better)
Translates to: KSESVLPSGPCW*QNKWSQRLLPT
Trigger: TGTTGGGAGCAGCCTTTGGCTCCATTTGTTTTGCAACCAGCATGGCCCAGAAGGTAACACAGACTCAGACTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000199280.2
CDS CAA 72 bp TGTCCCGGGTTTCATACACACAGTCCATTGTCACCGTaGTCTTCTCCACCACAGAAATTGAAGTCTGAGTCT +
Preference number: 6 (lower is better)
Translates to: CPGFHTHSPLSP*SSPPQKLKSES
Trigger: AGACTCAGACTTCAATTTCTGTGGTGGAGAAGACAACGGTGACAATGGACTGTGTGTATGAAACCCGGGACA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000103633.2
ENSMUST00000199280.2
CDS CAA 90 bp AGTAAGAACTGTCCCGGGTTTCATACACACAGTCCATTGTCACCGTaGTCTTCTCCACCACAGAAATTGAAGTCTGAGTCTGTGTTACCT +
Preference number: 6 (lower is better)
Translates to: SKNCPGFHTHSPLSP*SSPPQKLKSESVLP
Trigger: AGGTAACACAGACTCAGACTTCAATTTCTGTGGTGGAGAAGACAACGGTGACAATGGACTGTGTGTATGAAACCCGGGACAGTTCTTACT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000103633.2
ENSMUST00000199280.2
CDS CAA 72 bp AGTAAGAACTGTCCCGGGTTTCATACACACAGTCCATaGTCACCGTTGTCTTCTCCACCACAGAAATTGAAG +
Preference number: 6 (lower is better)
Translates to: SKNCPGFHTHSP*SPLSSPPQKLK
Trigger: CTTCAATTTCTGTGGTGGAGAAGACAACGGTGACAATGGACTGTGTGTATGAAACCCGGGACAGTTCTTACT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000103633.2
ENSMUST00000199280.2
CDS CAA 90 bp AGAATAAGAAGTAAGAACTGTCCCGGGTTTCATACACACAGTCCATaGTCACCGTTGTCTTCTCCACCACAGAAATTGAAGTCTGAGTCT +
Preference number: 6 (lower is better)
Translates to: RIRSKNCPGFHTHSP*SPLSSPPQKLKSES
Trigger: AGACTCAGACTTCAATTTCTGTGGTGGAGAAGACAACGGTGACAATGGACTGTGTGTATGAAACCCGGGACAGTTCTTACTTCTTATTCT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000103633.2
ENSMUST00000199280.2