Pregenerated sensors for TRAV16D-DV11 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000076796

Ensembl transcript IDs: ENSMUST00000103606.2

Found 3 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
CDS CAA 72 bp	AGTAAGAACTGTCCTGGGTTTCATACACACAGTCCATaGTCACCGTTGTCTTCTCCATCACAGAAATTGAAG	+
Preference number: 6 (lower is better) Translates to: SKNCPGFHTHSP*SPLSSPSQKLK Trigger: CTTCAATTTCTGTGATGGAGAAGACAACGGTGACAATGGACTGTGTGTATGAAACCCAGGACAGTTCTTACT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000103606.2
CDS CAA 90 bp	AGAATAAGAAGTAAGAACTGTCCTGGGTTTCATACACACAGTCCATaGTCACCGTTGTCTTCTCCATCACAGAAATTGAAGTCTGAGTCT	+
Preference number: 6 (lower is better) Translates to: RIRSKNCPGFHTHSP*SPLSSPSQKLKSES Trigger: AGACTCAGACTTCAATTTCTGTGATGGAGAAGACAACGGTGACAATGGACTGTGTGTATGAAACCCAGGACAGTTCTTACTTCTTATTCT 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000103606.2
CDS GCA 72 bp	TGGCTTCTGAAAGTTCAGAGAATAATGACCCACTGTTaGATTTTCCTTTTTGTAAGAGTCCTGACGAATAAG	+
Preference number: 6 (lower is better) Translates to: WLLKVQRIMTHC*IFLFVRVLTNK Trigger: CTTATTCGTCAGGACTCTTACAAAAAGGAAAATGCAACAGTGGGTCATTATTCTCTGAACTTTCAGAAGCCA 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000103606.2

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