Pregenerated sensors for TRAV16 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000076855Ensembl transcript IDs: ENSMUST00000103667.6
Found 5 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS GCA 72 bp | AGTCTGAGTCTGTGTTACCTTCTGGGCCATGCTGGTTaGAAAACAAATGGAGCCAAAGGCTGCTCCCAGCAG | + |
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Preference number: 6 (lower is better) Translates to: SLSLCYLLGHAG*KTNGAKGCSQQ Trigger: CTGCTGGGAGCAGCCTTTGGCTCCATTTGTTTTGCAACCAGCATGGCCCAGAAGGTAACACAGACTCAGACT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000103667.6 |
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| CDS CAA 72 bp | AAGTCTGAGTCTGTGTTACCTTCTGGGCCATGCTGGTaGCAAAACAAATGGAGCCAAAGGCTGCTCCCAGCA | + |
|
Preference number: 6 (lower is better) Translates to: KSESVLPSGPCW*QNKWSQRLLPA Trigger: TGCTGGGAGCAGCCTTTGGCTCCATTTGTTTTGCAACCAGCATGGCCCAGAAGGTAACACAGACTCAGACTT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000103667.6 |
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| CDS GCA 72 bp | AAATTGAAGTCTGAGTCTGTGTTACCTTCTGGGCCATaGTGGTTGCAAAACAAATGGAGCCAAAGGCTGCTC | + |
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Preference number: 6 (lower is better) Translates to: KLKSESVLPSGP*WLQNKWSQRLL Trigger: GAGCAGCCTTTGGCTCCATTTGTTTTGCAACCAGCATGGCCCAGAAGGTAACACAGACTCAGACTTCAATTT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000103667.6 |
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| CDS CAA 72 bp | AGTAAGAACTGTCCCGGGTTTCATACACACAGTCCATaGTCACCGTTGTCTTCTCCATCACAGAAATTGAAG | + |
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Preference number: 6 (lower is better) Translates to: SKNCPGFHTHSP*SPLSSPSQKLK Trigger: CTTCAATTTCTGTGATGGAGAAGACAACGGTGACAATGGACTGTGTGTATGAAACCCGGGACAGTTCTTACT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000103667.6 |
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| CDS CAA 90 bp | AGAATAAGAAGTAAGAACTGTCCCGGGTTTCATACACACAGTCCATaGTCACCGTTGTCTTCTCCATCACAGAAATTGAAGTCTGAGTCT | + |
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Preference number: 6 (lower is better) Translates to: RIRSKNCPGFHTHSP*SPLSSPSQKLKSES Trigger: AGACTCAGACTTCAATTTCTGTGATGGAGAAGACAACGGTGACAATGGACTGTGTGTATGAAACCCGGGACAGTTCTTACTTCTTATTCT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000103667.6 |
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