Pregenerated sensors for TRAV15N-2 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000104915

Ensembl transcript IDs: ENSMUST00000199112.2

Found 3 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
CDS TCA 90 bp	AAATACGGTAGAAGTATTCACTTGTCTCATATGAACAGTCCAGGGTaGCTTCTTCTCCCCACTGACTGCTGCCTGTTGGCTGGACCTGAG	+
Preference number: 5 (lower is better) Translates to: KYGRSIHLSHMNSPG*LLLPTDCCLLAGPE Trigger: CTCAGGTCCAGCCAACAGGCAGCAGTCAGTGGGGAGAAGAAGTCACCCTGGACTGTTCATATGAGACAAGTGAATACTTCTACCGTATTT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000199112.2
CDS GCA 72 bp	CTGTTGGCTGGACCTGAGTCACTCTCTGGGCCACATTaGATCCAGAGAAAGCCAAGGCCACCAGCACACAGA	+
Preference number: 6 (lower is better) Translates to: LLAGPESLSGPH*IQRKPRPPAHR Trigger: TCTGTGTGCTGGTGGCCTTGGCTTTCTCTGGATGCAATGTGGCCCAGAGAGTGACTCAGGTCCAGCCAACAG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000199112.2
CDS TCA 72 bp	AGAAGTATTCACTTGTCTCATATGAACAGTCCAGGGTaGCTTCTTCTCCCCACTGACTGCTGCCTGTTGGCT	+
Preference number: 6 (lower is better) Translates to: RSIHLSHMNSPG*LLLPTDCCLLA Trigger: AGCCAACAGGCAGCAGTCAGTGGGGAGAAGAAGTCACCCTGGACTGTTCATATGAGACAAGTGAATACTTCT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000199112.2

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