Pregenerated sensors for TRAV15N-1 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000094413

Ensembl transcript IDs: ENSMUST00000103590.4, ENSMUST00000197433.5

Found 3 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
CDS TCA 90 bp	AAAGATGGTATAAGACCTGACTTGTCTCATATGAACAGTCCAGGGTaGGTTCTTCGCCCTCCTGCCTGCTTGCTGTTGACCAGACCTGAA	+
Preference number: 5 (lower is better) Translates to: KDGIRPDLSHMNSPG*VLRPPACLLLTRPE Trigger: TTCAGGTCTGGTCAACAGCAAGCAGGCAGGAGGGCGAAGAACTCACCCTGGACTGTTCATATGAGACAAGTCAGGTCTTATACCATCTTT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000103590.4 ENSMUST00000197433.5
CDS TCA 90 bp	TCTCCACTAAGAAGGTGCTTGTACCAGAAAAGATGGTATAAGACCTaGCTTGTCTCATATGAACAGTCCAGGGTGAGTTCTTCGCCCTCC	+
Preference number: 5 (lower is better) Translates to: SPLRRCLYQKRWYKT*LVSYEQSRVSSSPS Trigger: GGAGGGCGAAGAACTCACCCTGGACTGTTCATATGAGACAAGTCAGGTCTTATACCATCTTTTCTGGTACAAGCACCTTCTTAGTGGAGA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000103590.4 ENSMUST00000197433.5
CDS CAA 72 bp	GCGGCCGCTCCTCTCTTTTGCAGTAGAAGAAGACGTTaGTCGAATAAGGAAAACCATCTCTCCACTAAGAAG	+
Preference number: 6 (lower is better) Translates to: AAAPLFCSRRRR*SNKENHLSTKK Trigger: CTTCTTAGTGGAGAGATGGTTTTCCTTATTCGACAAACGTCTTCTTCTACTGCAAAAGAGAGGAGCGGCCGC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000103590.4 ENSMUST00000197433.5

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