Pregenerated sensors for TRAV15-1-DV6-1 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000094016

Ensembl transcript IDs: ENSMUST00000103653.3, ENSMUST00000200101.2

Found 6 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
CDS TCA 72 bp	TTTTCGCCCTCCTGCCTGCTTGTTGTTGACCAGACCTaGATCACTTTCTGGGCCACATTAGATCCAGAGAAA	+
Preference number: 6 (lower is better) Translates to: FSPSCLLVVDQT*ITFWATLDPEK Trigger: TTTCTCTGGATCTAATGTGGCCCAGAAAGTGATTCAGGTCTGGTCAACAACAAGCAGGCAGGAGGGCGAAAA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000200101.2
CDS TCA 72 bp	ATAAGACCTGACTTGTCTTATATGAACAGTCCAGTGTaGGTTTTTCGCCCTCCTGCCTGCTTGTTGTTGACC	+
Preference number: 6 (lower is better) Translates to: IRPDLSYMNSPV*VFRPPACLLLT Trigger: GGTCAACAACAAGCAGGCAGGAGGGCGAAAAACTCACACTGGACTGTTCATATAAGACAAGTCAGGTCTTAT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000103653.3 ENSMUST00000200101.2
CDS CAA 72 bp	GCGGCCGCTCCTCTCTATTGCAATAGTAGAAGGCATTaGTCGAATAAGCAAAACCATCTCTCCACTAAGAAG	+
Preference number: 6 (lower is better) Translates to: AAAPLYCNSRRH*SNKQNHLSTKK Trigger: CTTCTTAGTGGAGAGATGGTTTTGCTTATTCGACAAATGCCTTCTACTATTGCAATAGAGAGGAGCGGCCGC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000103653.3 ENSMUST00000200101.2
CDS GCA 72 bp	CTGGAAGACTACAGAATAGCGGCCGCTCCTCTCTATTaGAATAGTAGAAGGCATTTGTCGAATAAGCAAAAC	+
Preference number: 6 (lower is better) Translates to: LEDYRIAAAPLY*NSRRHLSNKQN Trigger: GTTTTGCTTATTCGACAAATGCCTTCTACTATTGCAATAGAGAGGAGCGGCCGCTATTCTGTAGTCTTCCAG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000103653.3 ENSMUST00000200101.2
CDS CAA 90 bp	TACAGAATAGCGGCCGCTCCTCTCTATTGCAATAGTAGAAGGCATTaGTCGAATAAGCAAAACCATCTCTCCACTAAGAAGGTGCTTGTA	+
Preference number: 6 (lower is better) Translates to: YRIAAAPLYCNSRRH*SNKQNHLSTKKVLV Trigger: TACAAGCACCTTCTTAGTGGAGAGATGGTTTTGCTTATTCGACAAATGCCTTCTACTATTGCAATAGAGAGGAGCGGCCGCTATTCTGTA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000103653.3 ENSMUST00000200101.2
CDS TCA 72 bp	AGAAGGTGCTTGTACCAGAAAAGATGGTATAAGACCTaGCTTGTCTTATATGAACAGTCCAGTGTGAGTTTT	+
Preference number: 6 (lower is better) Translates to: RRCLYQKRWYKT*LVLYEQSSVSF Trigger: AAAACTCACACTGGACTGTTCATATAAGACAAGTCAGGTCTTATACCATCTTTTCTGGTACAAGCACCTTCT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000103653.3 ENSMUST00000200101.2