Pregenerated sensors for TRAV14N-3 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000076824

Ensembl transcript IDs: ENSMUST00000103635.3, ENSMUST00000103652.5

Found 4 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
CDS CCA 72 bp	ATCGTCCATCTTCCTTTTTATCGGACACTGAACGTATaGCTATCAGGAGAGCAGGGCCTTCCCCAGGGAACT	+
Preference number: 6 (lower is better) Translates to: IVHLPFYRTLNV*LSGEQGLPQGT Trigger: AGTTCCCTGGGGAAGGCCCTGCTCTCCTGATAGCCATACGTTCAGTGTCCGATAAAAAGGAAGATGGACGAT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000103635.3 ENSMUST00000103652.5
CDS TCA 72 bp	GATTGTGAATCGTCCATCTTCCTTTTTATCGGACACTaGACGTATGGCTATCAGGAGAGCAGGGCCTTCCCC	+
Preference number: 6 (lower is better) Translates to: DCESSIFLFIGH*TYGYQESRAFP Trigger: GGGGAAGGCCCTGCTCTCCTGATAGCCATACGTTCAGTGTCCGATAAAAAGGAAGATGGACGATTCACAATC 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000103635.3 ENSMUST00000103652.5
CDS CAA 72 bp	CAGAATTGCGGTCTCTCCTTCCCAGACTGTCAGAGATaGGGAACTTTGTCTCACCTGCTGCTGGTCATGTTT	+
Preference number: 6 (lower is better) Translates to: QNCGLSFPDCQR*GTLSHLLLVMF Trigger: AAACATGACCAGCAGCAGGTGAGACAAAGTTCCCAATCTCTGACAGTCTGGGAAGGAGAGACCGCAATTCTG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000103652.5
CDS TCA 72 bp	TCATGTTTCTCCTGCTGGCCACTCACCCCAGCTAGGTaGAGACCTAGAAGTAAAAACAATGCTGTCAGGATC	+
Preference number: 6 (lower is better) Translates to: SCFSCWPLTPAR*RPRSKNNAVRI Trigger: GATCCTGACAGCATTGTTTTTACTTCTAGGTCTTCACCTAGCTGGGGTGAGTGGCCAGCAGGAGAAACATGA 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000103652.5

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