Pregenerated sensors for TRAV14N-2 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000093801Ensembl transcript IDs: ENSMUST00000103623.3, ENSMUST00000197614.2
Found 4 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS GCA 90 bp | TCTCCTTCCCAGACTGTCAGAGATTGGGGACTTTGTCTCACCTGCTaGTGGTCACGTTTCTCCTGCTGCTGGCCACTCACCCCAGCTAGG | + |
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Preference number: 5 (lower is better) Translates to: SPSQTVRDWGLCLTC*WSRFSCCWPLTPAR Trigger: CCTAGCTGGGGTGAGTGGCCAGCAGCAGGAGAAACGTGACCAGCAGCAGGTGAGACAAAGTCCCCAATCTCTGACAGTCTGGGAAGGAGA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000197614.2 |
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| CDS GCA 90 bp | GTCTCTCCTTCCCAGACTGTCAGAGATTGGGGACTTTGTCTCACCTaGTGCTGGTCACGTTTCTCCTGCTGCTGGCCACTCACCCCAGCT | + |
|
Preference number: 5 (lower is better) Translates to: VSPSQTVRDWGLCLT*CWSRFSCCWPLTPA Trigger: AGCTGGGGTGAGTGGCCAGCAGCAGGAGAAACGTGACCAGCAGCAGGTGAGACAAAGTCCCCAATCTCTGACAGTCTGGGAAGGAGAGAC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000197614.2 |
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| CDS GCA 90 bp | TCCATCTTCCTTTTTATTGGACACTGGACGTATGGCTATCAGGAGTaGAGGGCTTTCCCTAGGGAACTGCCAGTACCATGGGAAGTAGTC | + |
|
Preference number: 5 (lower is better) Translates to: SIFLFIGHWTYGYQE*RAFPRELPVPWEVV Trigger: GACTACTTCCCATGGTACTGGCAGTTCCCTAGGGAAAGCCCTGCACTCCTGATAGCCATACGTCCAGTGTCCAATAAAAAGGAAGATGGA 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000103623.3 ENSMUST00000197614.2 |
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| CDS CAA 72 bp | CAGAATTGCTGTCTCTCCTTCCCAGACTGTCAGAGATaGGGGACTTTGTCTCACCTGCTGCTGGTCACGTTT | + |
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Preference number: 6 (lower is better) Translates to: QNCCLSFPDCQR*GTLSHLLLVTF Trigger: AAACGTGACCAGCAGCAGGTGAGACAAAGTCCCCAATCTCTGACAGTCTGGGAAGGAGAGACAGCAATTCTG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000197614.2 |
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