Pregenerated sensors for TRAV14N-1 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000096827

Ensembl transcript IDs: ENSMUST00000177578.2, ENSMUST00000196639.2

Found 2 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
CDS TCA 90 bp	ATTGAAGAAGATTGTGAATCGTCCATCTTCCTTTTTATCGGACACTaGACGTATGGATATCAGGAGTGCAGGGCCTTCCCCAGGGAACTG	+
Preference number: 5 (lower is better) Translates to: IEEDCESSIFLFIGH*TYGYQECRAFPREL Trigger: CAGTTCCCTGGGGAAGGCCCTGCACTCCTGATATCCATACGTTCAGTGTCCGATAAAAAGGAAGATGGACGATTCACAATCTTCTTCAAT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000177578.2 ENSMUST00000196639.2
CDS CAA 72 bp	CAGAATTGCGGTCTCTCCTTCCCAGACTGTCAGAGATaGGGGACTTTGTCTCACCTGCTGCTGGTCACGTTT	+
Preference number: 6 (lower is better) Translates to: QNCGLSFPDCQR*GTLSHLLLVTF Trigger: AAACGTGACCAGCAGCAGGTGAGACAAAGTCCCCAATCTCTGACAGTCTGGGAAGGAGAGACCGCAATTCTG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000177578.2 ENSMUST00000196639.2

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