Pregenerated sensors for TRAV14D-1 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000095854

Ensembl transcript IDs: ENSMUST00000181038.3, ENSMUST00000187138.2

Found 3 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
CDS CCA 90 bp	CTGCAGTTCAGAATTGCGGTCTCTCCTTCCCAGACTGTCAGAGATTaGGGACTTTGTCTCACCTGCTGCTGGTCACGTTTCTCCTGCTGC	+
Preference number: 5 (lower is better) Translates to: LQFRIAVSPSQTVRD*GLCLTCCWSRFSCC Trigger: GCAGCAGGAGAAACGTGACCAGCAGCAGGTGAGACAAAGTCCCCAATCTCTGACAGTCTGGGAAGGAGAGACCGCAATTCTGAACTGCAG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000181038.3
CDS TCA 72 bp	CTTTGTCTCACCTGCTGCTGGTCACGTTTCTCTAGGTaGAGGCCTAGGAGTAAAAACGTTGCTGTCAGGATC	+
Preference number: 6 (lower is better) Translates to: LCLTCCWSRFSR*RPRSKNVAVRI Trigger: GATCCTGACAGCAACGTTTTTACTCCTAGGCCTTCACCTAGAGAAACGTGACCAGCAGCAGGTGAGACAAAG 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000187138.2
CDS TCA 72 bp	GATTGTGAATCGTCCATCTTCCTTTTTATCGGACACTaGACGTATGGATATCAGGAGTGCAGGGCCTTCCCC	+
Preference number: 6 (lower is better) Translates to: DCESSIFLFIGH*TYGYQECRAFP Trigger: GGGGAAGGCCCTGCACTCCTGATATCCATACGTTCAGTGTCCGATAAAAAGGAAGATGGACGATTCACAATC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000181038.3 ENSMUST00000187138.2

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