Pregenerated sensors for TRAV14-3 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000094212

Ensembl transcript IDs: ENSMUST00000103589.6

Found 3 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
CDS GCA 90 bp	GTCTCTCCTTCCCAGACTGTCAGAGATTGGGGACTTTGTCTCACCTaGTGCTGGTCACGTTTCTCCTGCTGGCCACTCACCCCAGATAGG	+
Preference number: 5 (lower is better) Translates to: VSPSQTVRDWGLCLT*CWSRFSCWPLTPDR Trigger: CCTATCTGGGGTGAGTGGCCAGCAGGAGAAACGTGACCAGCAGCAGGTGAGACAAAGTCCCCAATCTCTGACAGTCTGGGAAGGAGAGAC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000103589.6
CDS CCA 72 bp	ACTGTCAGAGATTGGGGACTTTGTCTCACCTGCTGCTaGTCACGTTTCTCCTGCTGGCCACTCACCCCAGAT	+
Preference number: 6 (lower is better) Translates to: TVRDWGLCLTCC*SRFSCWPLTPD Trigger: ATCTGGGGTGAGTGGCCAGCAGGAGAAACGTGACCAGCAGCAGGTGAGACAAAGTCCCCAATCTCTGACAGT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000103589.6
CDS TCA 72 bp	TCACGTTTCTCCTGCTGGCCACTCACCCCAGATAGGTaGAGGCCTAGAAGTAAAAATGATGCTGTCAGGATC	+
Preference number: 6 (lower is better) Translates to: SRFSCWPLTPDR*RPRSKNDAVRI Trigger: GATCCTGACAGCATCATTTTTACTTCTAGGCCTTCACCTATCTGGGGTGAGTGGCCAGCAGGAGAAACGTGA 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000103589.6

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