Pregenerated sensors for TRAV14-2 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000095711

Ensembl transcript IDs: ENSMUST00000179267.4, ENSMUST00000184874.2

Found 7 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
CDS GCA 90 bp	TCTCCTTCCCAGACTGTCAGAGATTGGGGACTTTGTCTCACCTGCTaGTGGTCATGTTTCTCCTGCTGCTGGCCACTCACCCCAGCTAGG	+
Preference number: 5 (lower is better) Translates to: SPSQTVRDWGLCLTC*WSCFSCCWPLTPAR Trigger: CCTAGCTGGGGTGAGTGGCCAGCAGCAGGAGAAACATGACCAGCAGCAGGTGAGACAAAGTCCCCAATCTCTGACAGTCTGGGAAGGAGA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000179267.4
CDS GCA 90 bp	GTCTCTCCTTCCCAGACTGTCAGAGATTGGGGACTTTGTCTCACCTaGTGCTGGTCATGTTTCTCCTGCTGCTGGCCACTCACCCCAGCT	+
Preference number: 5 (lower is better) Translates to: VSPSQTVRDWGLCLT*CWSCFSCCWPLTPA Trigger: AGCTGGGGTGAGTGGCCAGCAGCAGGAGAAACATGACCAGCAGCAGGTGAGACAAAGTCCCCAATCTCTGACAGTCTGGGAAGGAGAGAC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000179267.4
CDS GCA 90 bp	TCCATCTTCCTTTTTATTGGACACTGGACGTATGGCTATCAGGAGTaGAGGGCTTTCCCCAGGGAACTGATGGTACCATGGGAAGTAGTC	+
Preference number: 5 (lower is better) Translates to: SIFLFIGHWTYGYQE*RAFPRELMVPWEVV Trigger: GACTACTTCCCATGGTACCATCAGTTCCCTGGGGAAAGCCCTGCACTCCTGATAGCCATACGTCCAGTGTCCAATAAAAAGGAAGATGGA 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000179267.4 ENSMUST00000184874.2
CDS GCA 72 bp	CAGACTGTCAGAGATTGGGGACTTTGTCTCACCTGCTaGTGGTCATGTTTCTCCTGCTGCTGGCCACTCACC	+
Preference number: 6 (lower is better) Translates to: QTVRDWGLCLTC*WSCFSCCWPLT Trigger: GGTGAGTGGCCAGCAGCAGGAGAAACATGACCAGCAGCAGGTGAGACAAAGTCCCCAATCTCTGACAGTCTG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000179267.4
CDS CCA 72 bp	ATCGTCCATCTTCCTTTTTATTGGACACTGGACGTATaGCTATCAGGAGTGCAGGGCTTTCCCCAGGGAACT	+
Preference number: 6 (lower is better) Translates to: IVHLPFYWTLDV*LSGVQGFPQGT Trigger: AGTTCCCTGGGGAAAGCCCTGCACTCCTGATAGCCATACGTCCAGTGTCCAATAAAAAGGAAGATGGACGAT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000179267.4 ENSMUST00000184874.2
CDS CAA 72 bp	CAGAATTGCTGTCTCTCCTTCCCAGACTGTCAGAGATaGGGGACTTTGTCTCACCTGCTGCTGGTCATGTTT	+
Preference number: 6 (lower is better) Translates to: QNCCLSFPDCQR*GTLSHLLLVMF Trigger: AAACATGACCAGCAGCAGGTGAGACAAAGTCCCCAATCTCTGACAGTCTGGGAAGGAGAGACAGCAATTCTG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000179267.4
CDS CAA 72 bp	TTGAAGAAGATTGTGAATCGTCCATCTTCCTTTTTATaGGACACTGGACGTATGGCTATCAGGAGTGCAGGG	+
Preference number: 6 (lower is better) Translates to: LKKIVNRPSSFL*DTGRMAIRSAG Trigger: CCCTGCACTCCTGATAGCCATACGTCCAGTGTCCAATAAAAAGGAAGATGGACGATTCACAATCTTCTTCAA 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000179267.4 ENSMUST00000184874.2

---

If you would like us to post a table for your organism of interest, or have questions, please reach out to eerik at stanford dot edu or xjgao at stanford.edu