Pregenerated sensors for TRAV14-1 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000076840

Ensembl transcript IDs: ENSMUST00000198297.2

Found 5 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
CDS GCA 90 bp	GTTCCTCCTTCCCAGACTGTCAGAGATTGGGGACTTTGTCTCACCTaGTGCTGGTCATGTTTCTCCTTCTGCTGGCCATTCACCCCAGCT	+
Preference number: 5 (lower is better) Translates to: VPPSQTVRDWGLCLT*CWSCFSFCWPFTPA Trigger: AGCTGGGGTGAATGGCCAGCAGAAGGAGAAACATGACCAGCAGCAGGTGAGACAAAGTCCCCAATCTCTGACAGTCTGGGAAGGAGGAAC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000198297.2
CDS CAA 72 bp	GGTTCCTCCTTCCCAGACTGTCAGAGATTGGGGACTTaGTCTCACCTGCTGCTGGTCATGTTTCTCCTTCTG	+
Preference number: 6 (lower is better) Translates to: GSSFPDCQRLGT*SHLLLVMFLLL Trigger: CAGAAGGAGAAACATGACCAGCAGCAGGTGAGACAAAGTCCCCAATCTCTGACAGTCTGGGAAGGAGGAACC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000198297.2
CDS CAA 90 bp	ACTGCAGGTCAGAACTGTGGTTCCTCCTTCCCAGACTGTCAGAGATaGGGGACTTTGTCTCACCTGCTGCTGGTCATGTTTCTCCTTCTG	+
Preference number: 6 (lower is better) Translates to: TAGQNCGSSFPDCQR*GTLSHLLLVMFLLL Trigger: CAGAAGGAGAAACATGACCAGCAGCAGGTGAGACAAAGTCCCCAATCTCTGACAGTCTGGGAAGGAGGAACCACAGTTCTGACCTGCAGT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000198297.2
CDS CAA 72 bp	CAGAACTGTGGTTCCTCCTTCCCAGACTGTCAGAGATaGGGGACTTTGTCTCACCTGCTGCTGGTCATGTTT	+
Preference number: 6 (lower is better) Translates to: QNCGSSFPDCQR*GTLSHLLLVMF Trigger: AAACATGACCAGCAGCAGGTGAGACAAAGTCCCCAATCTCTGACAGTCTGGGAAGGAGGAACCACAGTTCTG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000198297.2
CDS TCA 72 bp	TGTTTCTCCTTCTGCTGGCCATTCACCCCAGCTAGGTaGAGGCCTAGGAGTAAAAATGATGCTGTCAGAATC	+
Preference number: 6 (lower is better) Translates to: CFSFCWPFTPAR*RPRSKNDAVRI Trigger: GATTCTGACAGCATCATTTTTACTCCTAGGCCTTCACCTAGCTGGGGTGAATGGCCAGCAGAAGGAGAAACA 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000198297.2

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