Pregenerated sensors for TRAV13N-4 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000076823

Ensembl transcript IDs: ENSMUST00000103634.3, ENSMUST00000196105.2

Found 3 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
CDS GCA 90 bp	CCACTGCACCTGGTTTGTAAAGATGGAAAAGCTACACTGGAGCTCTaGGTTCTCCGCCTCCTGCAGAACCAAGGATGCGGGACTCTGCTG	+
Preference number: 5 (lower is better) Translates to: PLHLVCKDGKATLEL*VLRLLQNQGCGTLL Trigger: CAGCAGAGTCCCGCATCCTTGGTTCTGCAGGAGGCGGAGAACGCAGAGCTCCAGTGTAGCTTTTCCATCTTTACAAACCAGGTGCAGTGG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000103634.3 ENSMUST00000196105.2
CDS TCA 90 bp	TCAGTCTCCCACTCTGCTTTGTCCCAGAAGGATTGTACAACAGGCTaGCGAGTCTTCCCCCAGGACGTTGGTAAAACCACTGCACCTGGT	+
Preference number: 5 (lower is better) Translates to: SVSHSALSQKDCTTG*RVFPQDVGKTTAPG Trigger: ACCAGGTGCAGTGGTTTTACCAACGTCCTGGGGGAAGACTCGTCAGCCTGTTGTACAATCCTTCTGGGACAAAGCAGAGTGGGAGACTGA 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000103634.3 ENSMUST00000196105.2
CDS CCA 72 bp	CACTGCACCTGGTTTGTAAAGATGGAAAAGCTACACTaGAGCTCTGCGTTCTCCGCCTCCTGCAGAACCAAG	+
Preference number: 6 (lower is better) Translates to: HCTWFVKMEKLH*SSAFSASCRTK Trigger: CTTGGTTCTGCAGGAGGCGGAGAACGCAGAGCTCCAGTGTAGCTTTTCCATCTTTACAAACCAGGTGCAGTG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000103634.3 ENSMUST00000196105.2

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