Pregenerated sensors for TRAV13N-3 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000096038Ensembl transcript IDs: ENSMUST00000179580.3
Found 5 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS GCA 90 bp | TTCGTTACTGGCTGCGGAGGATGTCAGTCTTCCACCTCTCTGCTCTaGCCAAGAAGGACTGTACAACAGGCTGACGAGTCTTCCCCCAGG | + |
|
Preference number: 5 (lower is better) Translates to: FVTGCGGCQSSTSLL*PRRTVQQADESSPR Trigger: CCTGGGGGAAGACTCGTCAGCCTGTTGTACAGTCCTTCTTGGGCAGAGCAGAGAGGTGGAAGACTGACATCCTCCGCAGCCAGTAACGAA 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000179580.3 |
||
| CDS GCA 72 bp | GGCTGCGGAGGATGTCAGTCTTCCACCTCTCTGCTCTaGCCAAGAAGGACTGTACAACAGGCTGACGAGTCT | + |
|
Preference number: 6 (lower is better) Translates to: GCGGCQSSTSLL*PRRTVQQADES Trigger: AGACTCGTCAGCCTGTTGTACAGTCCTTCTTGGGCAGAGCAGAGAGGTGGAAGACTGACATCCTCCGCAGCC 57% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000179580.3 |
||
| CDS GCA 72 bp | TTACTGGCTGCGGAGGATGTCAGTCTTCCACCTCTCTaGTCTGCCCAAGAAGGACTGTACAACAGGCTGACG | + |
|
Preference number: 6 (lower is better) Translates to: LLAAEDVSLPPL*SAQEGLYNRLT Trigger: CGTCAGCCTGTTGTACAGTCCTTCTTGGGCAGAGCAGAGAGGTGGAAGACTGACATCCTCCGCAGCCAGTAA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000179580.3 |
||
| CDS GCA 72 bp | GGAAATGTGCAAAGAGCTGCGACTTTCGTTACTGGCTaGGGAGGATGTCAGTCTTCCACCTCTCTGCTCTGC | + |
|
Preference number: 6 (lower is better) Translates to: GNVQRAATFVTG*GGCQSSTSLLC Trigger: GCAGAGCAGAGAGGTGGAAGACTGACATCCTCCGCAGCCAGTAACGAAAGTCGCAGCTCTTTGCACATTTCC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000179580.3 |
||
| CDS CAA 90 bp | CCAAGAAGGACTGTACAACAGGCTGACGAGTCTTCCCCCAGGACGTaGGTAAAACCACTGCATACTGTTCAAAGTTGTGGAATAGGTGCA | + |
|
Preference number: 6 (lower is better) Translates to: PRRTVQQADESSPRT*VKPLHTVQSCGIGA Trigger: TGCACCTATTCCACAACTTTGAACAGTATGCAGTGGTTTTACCAACGTCCTGGGGGAAGACTCGTCAGCCTGTTGTACAGTCCTTCTTGG 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000179580.3 |
||