Pregenerated sensors for TRAV13N-1 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000104629

Ensembl transcript IDs: ENSMUST00000198359.2

Found 3 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
CDS GCA 90 bp	TCTGCGTTTTCCCCCTCCTGCAGAACCAAGGACGTGGGACTCTGCTaGACTTGCTGTCCTTTCACCCAGCAAACCTGGGTGCACAGAAGC	+
Preference number: 5 (lower is better) Translates to: SAFSPSCRTKDVGLC*TCCPFTQQTWVHRS Trigger: GCTTCTGTGCACCCAGGTTTGCTGGGTGAAAGGACAGCAAGTGCAGCAGAGTCCCACGTCCTTGGTTCTGCAGGAGGGGGAAAACGCAGA 58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000198359.2
CDS GCA 90 bp	AGCTCTGCGTTTTCCCCCTCCTGCAGAACCAAGGACGTGGGACTCTaGTGCACTTGCTGTCCTTTCACCCAGCAAACCTGGGTGCACAGA	+
Preference number: 5 (lower is better) Translates to: SSAFSPSCRTKDVGL*CTCCPFTQQTWVHR Trigger: TCTGTGCACCCAGGTTTGCTGGGTGAAAGGACAGCAAGTGCAGCAGAGTCCCACGTCCTTGGTTCTGCAGGAGGGGGAAAACGCAGAGCT 58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000198359.2
CDS CAA 72 bp	ATTGTAGAACACGCTGATGAGACTTCCCCCAGGACGTaGGTAAAACCACTGCATACTGTTCAAAGATGTGGA	+
Preference number: 6 (lower is better) Translates to: IVEHADETSPRT*VKPLHTVQRCG Trigger: TCCACATCTTTGAACAGTATGCAGTGGTTTTACCAACGTCCTGGGGGAAGTCTCATCAGCGTGTTCTACAAT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000198359.2

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