Pregenerated sensors for TRAV13D-4 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000096329

Ensembl transcript IDs: ENSMUST00000103607.3, ENSMUST00000196079.2

Found 4 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
CDS GCA 90 bp	AGCTCTGCGTTCTCCCCCTCCTGCAGAACCAAGGATGCAGGACTCTaGTGCACTTGCTGTCCTTTCACCCAGCAAACCTGTGTGCACAGA	+
Preference number: 5 (lower is better) Translates to: SSAFSPSCRTKDAGL*CTCCPFTQQTCVHR Trigger: TCTGTGCACACAGGTTTGCTGGGTGAAAGGACAGCAAGTGCAGCAGAGTCCTGCATCCTTGGTTCTGCAGGAGGGGGAGAACGCAGAGCT 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000196079.2
CDS TCA 90 bp	TCAGTCTTCCAGTGTGCTTTGTCCCAGAAGGATTGTACAACAGGCTaGCGAGGCTTCCCCCAGGACGTTGGTAAAACCACTGCAGCCGGG	+
Preference number: 5 (lower is better) Translates to: SVFQCALSQKDCTTG*RGFPQDVGKTTAAG Trigger: CCCGGCTGCAGTGGTTTTACCAACGTCCTGGGGGAAGCCTCGTCAGCCTGTTGTACAATCCTTCTGGGACAAAGCACACTGGAAGACTGA 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000103607.3 ENSMUST00000196079.2
CDS GCA 90 bp	GCTGTGGAGGAAAAGTTACACTGCAGCTCTGCGTTCTCCCCCTCCTaGAGAACCAAGGATGCAGGACTCTGCTGCACTTGCTGTCCTTTC	+
Preference number: 5 (lower is better) Translates to: AVEEKLHCSSAFSPS*RTKDAGLCCTCCPF Trigger: GAAAGGACAGCAAGTGCAGCAGAGTCCTGCATCCTTGGTTCTGCAGGAGGGGGAGAACGCAGAGCTGCAGTGTAACTTTTCCTCCACAGC 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000196079.2
CDS CAA 72 bp	GATGTCAGTCTTCCAGTGTGCTTTGTCCCAGAAGGATaGTACAACAGGCTGACGAGGCTTCCCCCAGGACGT	+
Preference number: 6 (lower is better) Translates to: DVSLPVCFVPEG*YNRLTRLPPGR Trigger: ACGTCCTGGGGGAAGCCTCGTCAGCCTGTTGTACAATCCTTCTGGGACAAAGCACACTGGAAGACTGACATC 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000103607.3 ENSMUST00000196079.2