Pregenerated sensors for TRAV13D-3 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000095643

Ensembl transcript IDs: ENSMUST00000179512.3

Found 3 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
CDS GCA 90 bp	TTCATTACTGGCTGCGGAGGATGTCAGTCTTCCACCTCTCTGCTCTaGCCAAGAAGGACTGTACAACAGGCTGACGAGTCTTCCCCCAGG	+
Preference number: 5 (lower is better) Translates to: FITGCGGCQSSTSLL*PRRTVQQADESSPR Trigger: CCTGGGGGAAGACTCGTCAGCCTGTTGTACAGTCCTTCTTGGGCAGAGCAGAGAGGTGGAAGACTGACATCCTCCGCAGCCAGTAATGAA 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000179512.3
CDS GCA 72 bp	GGAAATGTGCAAAGAGCTGCGACTTTCATTACTGGCTaGGGAGGATGTCAGTCTTCCACCTCTCTGCTCTGC	+
Preference number: 6 (lower is better) Translates to: GNVQRAATFITG*GGCQSSTSLLC Trigger: GCAGAGCAGAGAGGTGGAAGACTGACATCCTCCGCAGCCAGTAATGAAAGTCGCAGCTCTTTGCACATTTCC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000179512.3
CDS CAA 72 bp	CAGGACGTTGGTAAAACCACTGCATACTGTTCAAAGTaGTGGAATAGGTGCACTGCAGCTCTGCGTTCTCCC	+
Preference number: 6 (lower is better) Translates to: QDVGKTTAYCSK*WNRCTAALRSP Trigger: GGGAGAACGCAGAGCTGCAGTGCACCTATTCCACAACTTTGAACAGTATGCAGTGGTTTTACCAACGTCCTG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000179512.3

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