Pregenerated sensors for TRAV13D-2 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000094758

Ensembl transcript IDs: ENSMUST00000103596.3, ENSMUST00000197954.2

Found 4 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
CDS CAA 72 bp	CTCCTGCAGAACCAAGGACGCGGGGCTCTGCTGCACTaGCTGTCCTTTCACCCAGCAAACCTGGGTGCACAG	+
Preference number: 6 (lower is better) Translates to: LLQNQGRGALLH*LSFHPANLGAQ Trigger: CTGTGCACCCAGGTTTGCTGGGTGAAAGGACAGCAAGTGCAGCAGAGCCCCGCGTCCTTGGTTCTGCAGGAG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000197954.2
CDS CAA 72 bp	ATTGGACAACAGGCTGACGAGGCTTCCCCCAGGACTTaGGTAAAACCACTGCAGCTGGGTTGCTGTGGAGGA	+
Preference number: 6 (lower is better) Translates to: IGQQADEASPRT*VKPLQLGCCGG Trigger: TCCTCCACAGCAACCCAGCTGCAGTGGTTTTACCAAAGTCCTGGGGGAAGCCTCGTCAGCCTGTTGTCCAAT 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000103596.3 ENSMUST00000197954.2
CDS CAA 72 bp	GATGTCAGTCTTCCAGTGTGCTTTGTCCCAGAAGGATaGGACAACAGGCTGACGAGGCTTCCCCCAGGACTT	+
Preference number: 6 (lower is better) Translates to: DVSLPVCFVPEG*DNRLTRLPPGL Trigger: AAGTCCTGGGGGAAGCCTCGTCAGCCTGTTGTCCAATCCTTCTGGGACAAAGCACACTGGAAGACTGACATC 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000103596.3 ENSMUST00000197954.2
CDS CCA 72 bp	CAGGACTTTGGTAAAACCACTGCAGCTGGGTTGCTGTaGAGGAAAAGTTACACTGCAGCTCTGCGTTCTCCC	+
Preference number: 6 (lower is better) Translates to: QDFGKTTAAGLL*RKSYTAALRSP Trigger: GGGAGAACGCAGAGCTGCAGTGTAACTTTTCCTCCACAGCAACCCAGCTGCAGTGGTTTTACCAAAGTCCTG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000103596.3 ENSMUST00000197954.2

---

If you would like us to post a table for your organism of interest, or have questions, please reach out to eerik at stanford dot edu or xjgao at stanford.edu