Pregenerated sensors for TRAV13D-1 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000076778

Ensembl transcript IDs: ENSMUST00000103588.4

Found 4 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
CDS TCA 90 bp	TCAGTCTCCCACTCTGCTTTGTCCCAGAAGGATTGTAGAACACGCTaGCGAGACTTCCCCCAGGACGTTGGTAAAACCACTGCATACTGT	+
Preference number: 5 (lower is better) Translates to: SVSHSALSQKDCRTR*RDFPQDVGKTTAYC Trigger: ACAGTATGCAGTGGTTTTACCAACGTCCTGGGGGAAGTCTCGTCAGCGTGTTCTACAATCCTTCTGGGACAAAGCAGAGTGGGAGACTGA 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000103588.4
CDS GCA 72 bp	TCCCCCTCCTGCAGAACCAAGGACGTGGGACTCTGCTaGACTTGCTGTCCTTTCACCCAGCAAACCTGGGTG	+
Preference number: 6 (lower is better) Translates to: SPSCRTKDVGLC*TCCPFTQQTWV Trigger: CACCCAGGTTTGCTGGGTGAAAGGACAGCAAGTGCAGCAGAGTCCCACGTCCTTGGTTCTGCAGGAGGGGGA 60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000103588.4
CDS CAA 72 bp	CTCCTGCAGAACCAAGGACGTGGGACTCTGCTGCACTaGCTGTCCTTTCACCCAGCAAACCTGGGTGCACAG	+
Preference number: 6 (lower is better) Translates to: LLQNQGRGTLLH*LSFHPANLGAQ Trigger: CTGTGCACCCAGGTTTGCTGGGTGAAAGGACAGCAAGTGCAGCAGAGTCCCACGTCCTTGGTTCTGCAGGAG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000103588.4
CDS CAA 72 bp	ATTGTAGAACACGCTGACGAGACTTCCCCCAGGACGTaGGTAAAACCACTGCATACTGTTCAAAGATGTGGA	+
Preference number: 6 (lower is better) Translates to: IVEHADETSPRT*VKPLHTVQRCG Trigger: TCCACATCTTTGAACAGTATGCAGTGGTTTTACCAACGTCCTGGGGGAAGTCTCGTCAGCGTGTTCTACAAT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000103588.4

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