Pregenerated sensors for TRAV13-5 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000087666

Ensembl transcript IDs: ENSMUST00000103671.4

Found 6 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
CDS GCA 90 bp	CCACTGCACCTGGTTTGTAGAGATGGAAAAGCTACACTGCAGCTCTaGGTTCTCCCCCTCCTGCAGAACCAAGGACGCGGGACTCTGCTG	+
Preference number: 5 (lower is better) Translates to: PLHLVCRDGKATLQL*VLPLLQNQGRGTLL Trigger: CAGCAGAGTCCCGCGTCCTTGGTTCTGCAGGAGGGGGAGAACGCAGAGCTGCAGTGTAGCTTTTCCATCTCTACAAACCAGGTGCAGTGG 58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000103671.4
CDS GCA 72 bp	GCTGCACTTGCTGACCTTTCACCCAGCAAACCTGGGTaGACAGAAGCCCCAGCAGAGAGCACATCAGCCTCT	+
Preference number: 6 (lower is better) Translates to: AALADLSPSKPG*TEAPAESTSAS Trigger: AGAGGCTGATGTGCTCTCTGCTGGGGCTTCTGTGCACCCAGGTTTGCTGGGTGAAAGGTCAGCAAGTGCAGC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000103671.4
CDS GCA 72 bp	CTGGTTTGTAGAGATGGAAAAGCTACACTGCAGCTCTaGGTTCTCCCCCTCCTGCAGAACCAAGGACGCGGG	+
Preference number: 6 (lower is better) Translates to: LVCRDGKATLQL*VLPLLQNQGRG Trigger: CCCGCGTCCTTGGTTCTGCAGGAGGGGGAGAACGCAGAGCTGCAGTGTAGCTTTTCCATCTCTACAAACCAG 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000103671.4
CDS CAA 72 bp	AATGTAGGACAGGCCGATGAGGCGTCCCCCAGGACGTaGGTAAAACCACTGCACCTGGTTTGTAGAGATGGA	+
Preference number: 6 (lower is better) Translates to: NVGQADEASPRT*VKPLHLVCRDG Trigger: TCCATCTCTACAAACCAGGTGCAGTGGTTTTACCAACGTCCTGGGGGACGCCTCATCGGCCTGTCCTACATT 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000103671.4
CDS TCA 72 bp	TCTGTGGTCTGGGAGGAGGATATAGTCAAAGAGCTGTaGCGTCCCTTAGTGACTGTTGAGGATGTCTGTTTT	+
Preference number: 6 (lower is better) Translates to: SVVWEEDIVKEL*RPLVTVEDVCF Trigger: AAAACAGACATCCTCAACAGTCACTAAGGGACGTCACAGCTCTTTGACTATATCCTCCTCCCAGACCACAGA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000103671.4
CDS TCA 72 bp	TATAGTCAAAGAGCTGTGACGTCCCTTAGTGACTGTTaGGGATGTCTGTTTTCCAGTAGGCTTCATTCCAGG	+
Preference number: 6 (lower is better) Translates to: YSQRAVTSLSDC*GCLFSSRLHSR Trigger: CCTGGAATGAAGCCTACTGGAAAACAGACATCCTCAACAGTCACTAAGGGACGTCACAGCTCTTTGACTATA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000103671.4

---

If you would like us to post a table for your organism of interest, or have questions, please reach out to eerik at stanford dot edu or xjgao at stanford.edu