Pregenerated sensors for TRAV13-4-DV7 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000094562

Ensembl transcript IDs: ENSMUST00000180380.3, ENSMUST00000184905.2

Found 6 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
CDS GCA 90 bp	TTCTCCCCCTCCTGCAGAACCAAGGATGCAGGACTCTGCTGCACTTaGTGTCCTTTCACCCAGCAAACCTGGGTGCACAGAAGCCCCAGC	+
Preference number: 5 (lower is better) Translates to: FSPSCRTKDAGLCCT*CPFTQQTWVHRSPS Trigger: GCTGGGGCTTCTGTGCACCCAGGTTTGCTGGGTGAAAGGACAGCAAGTGCAGCAGAGTCCTGCATCCTTGGTTCTGCAGGAGGGGGAGAA 59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000180380.3
CDS GCA 90 bp	AGCTCTGCGTTCTCCCCCTCCTGCAGAACCAAGGATGCAGGACTCTaGTGCACTTGCTGTCCTTTCACCCAGCAAACCTGGGTGCACAGA	+
Preference number: 5 (lower is better) Translates to: SSAFSPSCRTKDAGL*CTCCPFTQQTWVHR Trigger: TCTGTGCACCCAGGTTTGCTGGGTGAAAGGACAGCAAGTGCAGCAGAGTCCTGCATCCTTGGTTCTGCAGGAGGGGGAGAACGCAGAGCT 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000180380.3
CDS CAA 90 bp	GTTCTCCCCCTCCTGCAGAACCAAGGATGCAGGACTCTGCTGCACTaGCTGTCCTTTCACCCAGCAAACCTGGGTGCACAGAAGCCCCAG	+
Preference number: 6 (lower is better) Translates to: VLPLLQNQGCRTLLH*LSFHPANLGAQKPQ Trigger: CTGGGGCTTCTGTGCACCCAGGTTTGCTGGGTGAAAGGACAGCAAGTGCAGCAGAGTCCTGCATCCTTGGTTCTGCAGGAGGGGGAGAAC 59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000180380.3
CDS GCA 72 bp	GAAAAGTTACACTGCAGCTCTGCGTTCTCCCCCTCCTaGAGAACCAAGGATGCAGGACTCTGCTGCACTTGC	+
Preference number: 6 (lower is better) Translates to: EKLHCSSAFSPS*RTKDAGLCCTC Trigger: GCAAGTGCAGCAGAGTCCTGCATCCTTGGTTCTGCAGGAGGGGGAGAACGCAGAGCTGCAGTGTAACTTTTC 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000180380.3 ENSMUST00000184905.2
CDS CCA 72 bp	CAGGACGTTGGTAAAACCACTGCAGCCGGGTTGCTGTaGAGGAAAAGTTACACTGCAGCTCTGCGTTCTCCC	+
Preference number: 6 (lower is better) Translates to: QDVGKTTAAGLL*RKSYTAALRSP Trigger: GGGAGAACGCAGAGCTGCAGTGTAACTTTTCCTCCACAGCAACCCGGCTGCAGTGGTTTTACCAACGTCCTG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000180380.3 ENSMUST00000184905.2
CDS CAA 72 bp	GATGTCAGTCTTCCAGTGTGCTTTGTCCCAGAAGGATaGGACAACAGGCTGACGAGGCTTCCCCCAGGACGT	+
Preference number: 6 (lower is better) Translates to: DVSLPVCFVPEG*DNRLTRLPPGR Trigger: ACGTCCTGGGGGAAGCCTCGTCAGCCTGTTGTCCAATCCTTCTGGGACAAAGCACACTGGAAGACTGACATC 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000180380.3 ENSMUST00000184905.2

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