Pregenerated sensors for TRAV13-2 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000076846

Ensembl transcript IDs: ENSMUST00000103658.4

Found 10 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
CDS GCA 90 bp	TCTGCGTTCTCCCCCTCCTGCAGAACCAAGGATGCGGGACTCTGCTaGACTTGCTGTCCTTTCACCCAGCAAACCTGGGTGCACAGAAGC	+
Preference number: 5 (lower is better) Translates to: SAFSPSCRTKDAGLC*TCCPFTQQTWVHRS Trigger: GCTTCTGTGCACCCAGGTTTGCTGGGTGAAAGGACAGCAAGTGCAGCAGAGTCCCGCATCCTTGGTTCTGCAGGAGGGGGAGAACGCAGA 59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000103658.4
CDS GCA 90 bp	AGCTCTGCGTTCTCCCCCTCCTGCAGAACCAAGGATGCGGGACTCTaGTGCACTTGCTGTCCTTTCACCCAGCAAACCTGGGTGCACAGA	+
Preference number: 5 (lower is better) Translates to: SSAFSPSCRTKDAGL*CTCCPFTQQTWVHR Trigger: TCTGTGCACCCAGGTTTGCTGGGTGAAAGGACAGCAAGTGCAGCAGAGTCCCGCATCCTTGGTTCTGCAGGAGGGGGAGAACGCAGAGCT 59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000103658.4
CDS GCA 90 bp	GTTACACTGCAGCTCTGCGTTCTCCCCCTCCTGCAGAACCAAGGATaGGGGACTCTGCTGCACTTGCTGTCCTTTCACCCAGCAAACCTG	+
Preference number: 5 (lower is better) Translates to: VTLQLCVLPLLQNQG*GTLLHLLSFHPANL Trigger: CAGGTTTGCTGGGTGAAAGGACAGCAAGTGCAGCAGAGTCCCGCATCCTTGGTTCTGCAGGAGGGGGAGAACGCAGAGCTGCAGTGTAAC 58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000103658.4
CDS GCA 72 bp	TCCCCCTCCTGCAGAACCAAGGATGCGGGACTCTGCTaGACTTGCTGTCCTTTCACCCAGCAAACCTGGGTG	+
Preference number: 6 (lower is better) Translates to: SPSCRTKDAGLC*TCCPFTQQTWV Trigger: CACCCAGGTTTGCTGGGTGAAAGGACAGCAAGTGCAGCAGAGTCCCGCATCCTTGGTTCTGCAGGAGGGGGA 60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000103658.4
CDS GCA 72 bp	CAGCTCTGCGTTCTCCCCCTCCTGCAGAACCAAGGATaGGGGACTCTGCTGCACTTGCTGTCCTTTCACCCA	+
Preference number: 6 (lower is better) Translates to: QLCVLPLLQNQG*GTLLHLLSFHP Trigger: TGGGTGAAAGGACAGCAAGTGCAGCAGAGTCCCGCATCCTTGGTTCTGCAGGAGGGGGAGAACGCAGAGCTG 60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000103658.4
CDS CCA 72 bp	CTCTGCTGCACTTGCTGTCCTTTCACCCAGCAAACCTaGGTGCACAGAAGCCCCAGCAGAGAACACAGCAGC	+
Preference number: 6 (lower is better) Translates to: LCCTCCPFTQQT*VHRSPSREHSS Trigger: GCTGCTGTGTTCTCTGCTGGGGCTTCTGTGCACCCAGGTTTGCTGGGTGAAAGGACAGCAAGTGCAGCAGAG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000103658.4
CDS CAA 72 bp	CTCCTGCAGAACCAAGGATGCGGGACTCTGCTGCACTaGCTGTCCTTTCACCCAGCAAACCTGGGTGCACAG	+
Preference number: 6 (lower is better) Translates to: LLQNQGCGTLLH*LSFHPANLGAQ Trigger: CTGTGCACCCAGGTTTGCTGGGTGAAAGGACAGCAAGTGCAGCAGAGTCCCGCATCCTTGGTTCTGCAGGAG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000103658.4
CDS GCA 72 bp	GAAAAGTTACACTGCAGCTCTGCGTTCTCCCCCTCCTaGAGAACCAAGGATGCGGGACTCTGCTGCACTTGC	+
Preference number: 6 (lower is better) Translates to: EKLHCSSAFSPS*RTKDAGLCCTC Trigger: GCAAGTGCAGCAGAGTCCCGCATCCTTGGTTCTGCAGGAGGGGGAGAACGCAGAGCTGCAGTGTAACTTTTC 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000103658.4
CDS CCA 72 bp	CAGGATGTTGGTAAAACCACTGCAGCCGGGTTGCTGTaGAGGAAAAGTTACACTGCAGCTCTGCGTTCTCCC	+
Preference number: 6 (lower is better) Translates to: QDVGKTTAAGLL*RKSYTAALRSP Trigger: GGGAGAACGCAGAGCTGCAGTGTAACTTTTCCTCCACAGCAACCCGGCTGCAGTGGTTTTACCAACATCCTG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000103658.4
CDS CAA 72 bp	ATTGTAGAACAGGCTGACGAGTCTTCCCCCAGGATGTaGGTAAAACCACTGCAGCCGGGTTGCTGTGGAGGA	+
Preference number: 6 (lower is better) Translates to: IVEQADESSPRM*VKPLQPGCCGG Trigger: TCCTCCACAGCAACCCGGCTGCAGTGGTTTTACCAACATCCTGGGGGAAGACTCGTCAGCCTGTTCTACAAT 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000103658.4

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