Pregenerated sensors for TRAV12N-3 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000093915

Ensembl transcript IDs: ENSMUST00000179583.3

Found 6 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
CDS CCA 90 bp	AGCATCACAGGCAACCCTTCTGTGAGAGTGACCAGGCCTTCTGTCTaGGTCACGGAGTCTCCATCGCCATTGCTCCTCCTGAGCATTAGG	+
Preference number: 5 (lower is better) Translates to: SITGNPSVRVTRPSV*VTESPSPLLLLSIR Trigger: CCTAATGCTCAGGAGGAGCAATGGCGATGGAGACTCCGTGACCCAGACAGAAGGCCTGGTCACTCTCACAGAAGGGTTGCCTGTGATGCT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000179583.3
CDS CCA 90 bp	GACTTCTGCAGATGGAAGGAGCTGCTGCTCTTATGGAGAGTGGCGTaGAACCCTTGGTGCTCGGTCCTCTTGTTGTCTGTGAAGCTCTTC	+
Preference number: 5 (lower is better) Translates to: DFCRWKELLLLWRVA*NPWCSVLLLSVKLF Trigger: GAAGAGCTTCACAGACAACAAGAGGACCGAGCACCAAGGGTTCCACGCCACTCTCCATAAGAGCAGCAGCTCCTTCCATCTGCAGAAGTC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000179583.3
CDS GCA 72 bp	GCTGCGCTGAGGACTTCTGCAGATGGAAGGAGCTGCTaGTCTTATGGAGAGTGGCGTGGAACCCTTGGTGCT	+
Preference number: 6 (lower is better) Translates to: AALRTSADGRSC*SYGEWRGTLGA Trigger: AGCACCAAGGGTTCCACGCCACTCTCCATAAGAGCAGCAGCTCCTTCCATCTGCAGAAGTCCTCAGCGCAGC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000179583.3
CDS CAA 72 bp	TGGAGAGTGGCGTGGAACCCTTGGTGCTCGGTCCTCTaGTTGTCTGTGAAGCTCTTCAGGAGTAGCCGAGGG	+
Preference number: 6 (lower is better) Translates to: WRVAWNPWCSVL*LSVKLFRSSRG Trigger: CCCTCGGCTACTCCTGAAGAGCTTCACAGACAACAAGAGGACCGAGCACCAAGGGTTCCACGCCACTCTCCA 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000179583.3
CDS CAA 72 bp	AGAGTGGCGTGGAACCCTTGGTGCTCGGTCCTCTTGTaGTCTGTGAAGCTCTTCAGGAGTAGCCGAGGGGAT	+
Preference number: 6 (lower is better) Translates to: RVAWNPWCSVLL*SVKLFRSSRGD Trigger: ATCCCCTCGGCTACTCCTGAAGAGCTTCACAGACAACAAGAGGACCGAGCACCAAGGGTTCCACGCCACTCT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000179583.3
CDS CAA 72 bp	TCTGTGAAGCTCTTCAGGAGTAGCCGAGGGGATTCATaGAGATGTTGCACATACCAGAAAAGGAAAGGATTT	+
Preference number: 6 (lower is better) Translates to: SVKLFRSSRGDS*RCCTYQKRKGF Trigger: AAATCCTTTCCTTTTCTGGTATGTGCAACATCTCAATGAATCCCCTCGGCTACTCCTGAAGAGCTTCACAGA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000179583.3

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