Pregenerated sensors for TRAV12N-1 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000096055

Ensembl transcript IDs: ENSMUST00000103587.4, ENSMUST00000198682.2

Found 10 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
CDS GCA 90 bp	CAGAGTCTGACAGCTGCACTGAGGACTTCTGCAGATGGAAGGAGCTaGTGCTCTTATGGAGAGTGGCGTGGAACCCTTGGTGCTCGGTCC	+
Preference number: 5 (lower is better) Translates to: QSLTAALRTSADGRS*CSYGEWRGTLGARS Trigger: GGACCGAGCACCAAGGGTTCCACGCCACTCTCCATAAGAGCAGCAGCTCCTTCCATCTGCAGAAGTCCTCAGTGCAGCTGTCAGACTCTG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000103587.4 ENSMUST00000198682.2
CDS GCA 90 bp	AGTCTGACAGCTGCACTGAGGACTTCTGCAGATGGAAGGAGCTGCTaGTCTTATGGAGAGTGGCGTGGAACCCTTGGTGCTCGGTCCTCT	+
Preference number: 5 (lower is better) Translates to: SLTAALRTSADGRSC*SYGEWRGTLGARSS Trigger: AGAGGACCGAGCACCAAGGGTTCCACGCCACTCTCCATAAGAGCAGCAGCTCCTTCCATCTGCAGAAGTCCTCAGTGCAGCTGTCAGACT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000103587.4 ENSMUST00000198682.2
CDS TCA 90 bp	AGGGGCTTCGTTGAGATATTGCACATACCAGAAAAAGGCAACATCTaGGTAAGCAGTCTGATAGGTGCAGTTCAGCATCACAGGCAACCC	+
Preference number: 5 (lower is better) Translates to: RGFVEILHIPEKGNI*VSSLIGAVQHHRQP Trigger: GGGTTGCCTGTGATGCTGAACTGCACCTATCAGACTGCTTACTCAGATGTTGCCTTTTTCTGGTATGTGCAATATCTCAACGAAGCCCCT 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000103587.4 ENSMUST00000198682.2
CDS CAA 72 bp	AGAGTGGCGTGGAACCCTTGGTGCTCGGTCCTCTTGTaGTCTGTGGAGCTCCGCAGGAGTAGTTTAGGGGCT	+
Preference number: 6 (lower is better) Translates to: RVAWNPWCSVLL*SVELRRSSLGA Trigger: AGCCCCTAAACTACTCCTGCGGAGCTCCACAGACAACAAGAGGACCGAGCACCAAGGGTTCCACGCCACTCT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000103587.4 ENSMUST00000198682.2
CDS CAA 72 bp	TGGAGAGTGGCGTGGAACCCTTGGTGCTCGGTCCTCTaGTTGTCTGTGGAGCTCCGCAGGAGTAGTTTAGGG	+
Preference number: 6 (lower is better) Translates to: WRVAWNPWCSVL*LSVELRRSSLG Trigger: CCCTAAACTACTCCTGCGGAGCTCCACAGACAACAAGAGGACCGAGCACCAAGGGTTCCACGCCACTCTCCA 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000103587.4 ENSMUST00000198682.2
CDS CAA 90 bp	CTGCTCTTATGGAGAGTGGCGTGGAACCCTTGGTGCTCGGTCCTCTaGTTGTCTGTGGAGCTCCGCAGGAGTAGTTTAGGGGCTTCGTTG	+
Preference number: 6 (lower is better) Translates to: LLLWRVAWNPWCSVL*LSVELRRSSLGASL Trigger: CAACGAAGCCCCTAAACTACTCCTGCGGAGCTCCACAGACAACAAGAGGACCGAGCACCAAGGGTTCCACGCCACTCTCCATAAGAGCAG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000103587.4 ENSMUST00000198682.2
CDS CAA 90 bp	CTCTTATGGAGAGTGGCGTGGAACCCTTGGTGCTCGGTCCTCTTGTaGTCTGTGGAGCTCCGCAGGAGTAGTTTAGGGGCTTCGTTGAGA	+
Preference number: 6 (lower is better) Translates to: LLWRVAWNPWCSVLL*SVELRRSSLGASLR Trigger: TCTCAACGAAGCCCCTAAACTACTCCTGCGGAGCTCCACAGACAACAAGAGGACCGAGCACCAAGGGTTCCACGCCACTCTCCATAAGAG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000103587.4 ENSMUST00000198682.2
CDS CAA 90 bp	TCTGTGACAGTGACCAGGCCTTCTGTCTGGGTCACGGAGTCTCCATaGCTCCTGAGCATTAGGAGGAGCACAAGAACTGAGCAGGTGACA	+
Preference number: 6 (lower is better) Translates to: SVTVTRPSVWVTESP*LLSIRRSTRTEQVT Trigger: TGTCACCTGCTCAGTTCTTGTGCTCCTCCTAATGCTCAGGAGCAATGGAGACTCCGTGACCCAGACAGAAGGCCTGGTCACTGTCACAGA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000103587.4
CDS CAA 90 bp	TCTGTGACAGTGACCAGGCCTTCTGTCTGGGTCACGGAGTCTCCATaGCTCCTTCTGAGCATTAGGAGGAGCACAAGAACTGAGCAGGTG	+
Preference number: 6 (lower is better) Translates to: SVTVTRPSVWVTESP*LLLSIRRSTRTEQV Trigger: CACCTGCTCAGTTCTTGTGCTCCTCCTAATGCTCAGAAGGAGCAATGGAGACTCCGTGACCCAGACAGAAGGCCTGGTCACTGTCACAGA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000198682.2
CDS CAA 72 bp	TCTGTGGAGCTCCGCAGGAGTAGTTTAGGGGCTTCGTaGAGATATTGCACATACCAGAAAAAGGCAACATCT	+
Preference number: 6 (lower is better) Translates to: SVELRRSSLGAS*RYCTYQKKATS Trigger: AGATGTTGCCTTTTTCTGGTATGTGCAATATCTCAACGAAGCCCCTAAACTACTCCTGCGGAGCTCCACAGA 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000103587.4 ENSMUST00000198682.2

---

If you would like us to post a table for your organism of interest, or have questions, please reach out to eerik at stanford dot edu or xjgao at stanford.edu