Pregenerated sensors for TRAV12D-2 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000096129

Ensembl transcript IDs: ENSMUST00000103593.3, ENSMUST00000197007.2

Found 2 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
CDS GCA 90 bp	CAGAGTCTGACAGCTGCACTGAGGACTTCTGCAGATGGAAGGAGCTaGTGCTCTTATGGAGAGTGGCGTAGAACCCTTGGTGCTCGGTCC	+
Preference number: 5 (lower is better) Translates to: QSLTAALRTSADGRS*CSYGEWRRTLGARS Trigger: GGACCGAGCACCAAGGGTTCTACGCCACTCTCCATAAGAGCAGCAGCTCCTTCCATCTGCAGAAGTCCTCAGTGCAGCTGTCAGACTCTG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000103593.3 ENSMUST00000197007.2
CDS GCA 90 bp	AGTCTGACAGCTGCACTGAGGACTTCTGCAGATGGAAGGAGCTGCTaGTCTTATGGAGAGTGGCGTAGAACCCTTGGTGCTCGGTCCTCT	+
Preference number: 5 (lower is better) Translates to: SLTAALRTSADGRSC*SYGEWRRTLGARSS Trigger: AGAGGACCGAGCACCAAGGGTTCTACGCCACTCTCCATAAGAGCAGCAGCTCCTTCCATCTGCAGAAGTCCTCAGTGCAGCTGTCAGACT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000103593.3 ENSMUST00000197007.2

---

If you would like us to post a table for your organism of interest, or have questions, please reach out to eerik at stanford dot edu or xjgao at stanford.edu